Coprococcus catus

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Eubacteriales; Lachnospiraceae; Coprococcus

Average proteome isoelectric point is 6.03

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3079 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3E2XS14|A0A3E2XS14_9FIRM Stage 0 sporulation protein A homolog OS=Coprococcus catus OX=116085 GN=DW747_01320 PE=4 SV=1
MM1 pKa = 7.68KK2 pKa = 10.31KK3 pKa = 10.06RR4 pKa = 11.84VITGLMAASVIVSLAGCGAGQKK26 pKa = 10.34EE27 pKa = 4.91SVEE30 pKa = 4.28STAPATTTEE39 pKa = 4.34TVAASQVEE47 pKa = 4.4TAEE50 pKa = 3.94ATEE53 pKa = 4.33TEE55 pKa = 4.39KK56 pKa = 10.37TVQEE60 pKa = 4.03DD61 pKa = 3.14RR62 pKa = 11.84AARR65 pKa = 11.84IKK67 pKa = 10.49AYY69 pKa = 10.0QAALDD74 pKa = 4.4NIYY77 pKa = 10.48QNHH80 pKa = 6.76ILPDD84 pKa = 3.99GSEE87 pKa = 3.99LRR89 pKa = 11.84DD90 pKa = 4.54DD91 pKa = 4.26ISGEE95 pKa = 3.69MSGNKK100 pKa = 9.14FAVYY104 pKa = 10.25DD105 pKa = 3.59VDD107 pKa = 4.21HH108 pKa = 7.9DD109 pKa = 4.04DD110 pKa = 3.99RR111 pKa = 11.84EE112 pKa = 4.32EE113 pKa = 4.52LVFCYY118 pKa = 8.97TATSMASMIAKK129 pKa = 9.89IYY131 pKa = 10.66DD132 pKa = 3.34YY133 pKa = 11.45DD134 pKa = 3.79EE135 pKa = 5.09ASGEE139 pKa = 4.12LYY141 pKa = 10.7EE142 pKa = 4.86EE143 pKa = 5.11LSQFPMLTFYY153 pKa = 11.57DD154 pKa = 3.78NATIGAGISHH164 pKa = 6.0NQGYY168 pKa = 10.48AGEE171 pKa = 4.42FWPYY175 pKa = 10.18TFYY178 pKa = 10.67TYY180 pKa = 11.16DD181 pKa = 3.55AANDD185 pKa = 3.8SYY187 pKa = 10.8RR188 pKa = 11.84AEE190 pKa = 4.28YY191 pKa = 10.07FVDD194 pKa = 4.03AWDD197 pKa = 4.08KK198 pKa = 11.27SLSEE202 pKa = 3.96VNYY205 pKa = 10.55NGEE208 pKa = 4.44AFPDD212 pKa = 4.14DD213 pKa = 4.23ADD215 pKa = 4.05KK216 pKa = 11.58DD217 pKa = 3.89GDD219 pKa = 4.17GIVYY223 pKa = 10.27YY224 pKa = 10.9LEE226 pKa = 5.49APDD229 pKa = 4.34GSEE232 pKa = 3.79TGEE235 pKa = 4.51PLDD238 pKa = 5.51KK239 pKa = 11.04DD240 pKa = 5.69AFDD243 pKa = 3.34QWISEE248 pKa = 4.23NVGKK252 pKa = 10.6EE253 pKa = 3.87EE254 pKa = 4.85NIPFQDD260 pKa = 3.53LTEE263 pKa = 4.51DD264 pKa = 4.78AISQIQQ270 pKa = 3.04

Molecular weight: 29.83 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3E2TNR7|A0A3E2TNR7_9FIRM Stp1/IreP family PP2C-type Ser/Thr phosphatase OS=Coprococcus catus OX=116085 GN=DW070_07630 PE=4 SV=1
MM1 pKa = 7.67KK2 pKa = 8.71MTFQPKK8 pKa = 7.78TRR10 pKa = 11.84QRR12 pKa = 11.84SKK14 pKa = 8.94VHH16 pKa = 5.99GFRR19 pKa = 11.84KK20 pKa = 10.0RR21 pKa = 11.84MSTANGRR28 pKa = 11.84KK29 pKa = 8.89VLAARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.71GRR39 pKa = 11.84KK40 pKa = 8.73VLSAA44 pKa = 4.05

Molecular weight: 5.07 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3079

0

3079

982488

27

2929

319.1

35.73

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.872 ± 0.047

1.522 ± 0.017

5.923 ± 0.035

7.269 ± 0.054

3.892 ± 0.032

7.022 ± 0.039

1.955 ± 0.023

7.38 ± 0.046

6.52 ± 0.042

8.837 ± 0.046

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.349 ± 0.027

4.245 ± 0.032

3.272 ± 0.024

3.445 ± 0.027

4.441 ± 0.038

5.734 ± 0.036

5.426 ± 0.038

6.907 ± 0.04

0.893 ± 0.015

4.095 ± 0.034
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski