Thermosulfidibacter takaii (strain DSM 17441 / JCM 13301 / NBRC 103674 / ABI70S6)

Taxonomy: cellular organisms; Bacteria; Aquificae; Aquificae; Aquificales; Aquificales genera incertae sedis; Thermosulfidibacter; Thermosulfidibacter takaii

Average proteome isoelectric point is 6.93

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1756 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0S3QSZ6|A0A0S3QSZ6_THET7 Chemotaxis protein MotA OS=Thermosulfidibacter takaii (strain DSM 17441 / JCM 13301 / NBRC 103674 / ABI70S6) OX=1298851 GN=motA PE=3 SV=1
MM1 pKa = 7.24AQAGSLCDD9 pKa = 3.6KK10 pKa = 10.67VDD12 pKa = 3.45YY13 pKa = 11.33DD14 pKa = 3.31IDD16 pKa = 3.97NFVAYY21 pKa = 10.18AGIDD25 pKa = 3.43VQLFEE30 pKa = 4.7NLNLFADD37 pKa = 4.73VSYY40 pKa = 9.39TWTKK44 pKa = 11.23AEE46 pKa = 4.03GDD48 pKa = 3.7NPHH51 pKa = 7.07FGNPWNVITDD61 pKa = 3.55HH62 pKa = 6.93GGTPEE67 pKa = 4.84DD68 pKa = 3.82PHH70 pKa = 7.78PSYY73 pKa = 10.45TGSYY77 pKa = 10.0DD78 pKa = 2.87PWFVITYY85 pKa = 8.53TNDD88 pKa = 3.03MDD90 pKa = 6.18DD91 pKa = 3.44MKK93 pKa = 11.12DD94 pKa = 3.29WYY96 pKa = 10.29DD97 pKa = 3.49LEE99 pKa = 4.65YY100 pKa = 10.72EE101 pKa = 4.03IFEE104 pKa = 4.38VSGGFQWDD112 pKa = 3.09IFKK115 pKa = 10.84NLSLKK120 pKa = 9.38TVATYY125 pKa = 11.08RR126 pKa = 11.84NFDD129 pKa = 3.65DD130 pKa = 4.36KK131 pKa = 11.69EE132 pKa = 4.06EE133 pKa = 3.92YY134 pKa = 10.39LYY136 pKa = 11.05EE137 pKa = 5.42DD138 pKa = 4.32NDD140 pKa = 4.0GEE142 pKa = 4.32MYY144 pKa = 10.42IINTSLIWRR153 pKa = 11.84FF154 pKa = 3.2

Molecular weight: 18.02 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0S3QRP9|A0A0S3QRP9_THET7 Cytochrome c biogenesis protein OS=Thermosulfidibacter takaii (strain DSM 17441 / JCM 13301 / NBRC 103674 / ABI70S6) OX=1298851 GN=resB PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.28QPSKK9 pKa = 10.25LKK11 pKa = 9.55MKK13 pKa = 9.95RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.93GFRR19 pKa = 11.84ARR21 pKa = 11.84MRR23 pKa = 11.84TRR25 pKa = 11.84SGRR28 pKa = 11.84EE29 pKa = 3.16IIKK32 pKa = 9.81RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84KK37 pKa = 8.68GRR39 pKa = 11.84KK40 pKa = 8.91RR41 pKa = 11.84LTVV44 pKa = 3.11

Molecular weight: 5.57 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1756

0

1756

571920

37

1542

325.7

36.66

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.116 ± 0.058

1.235 ± 0.025

4.924 ± 0.043

8.0 ± 0.065

4.58 ± 0.05

7.075 ± 0.049

1.723 ± 0.027

7.228 ± 0.049

8.012 ± 0.055

9.995 ± 0.062

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.272 ± 0.029

3.452 ± 0.04

4.182 ± 0.034

2.428 ± 0.029

5.185 ± 0.048

5.215 ± 0.048

4.455 ± 0.041

8.264 ± 0.058

1.058 ± 0.025

3.6 ± 0.043
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski