Perinet vesiculovirus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Alpharhabdovirinae; Vesiculovirus

Average proteome isoelectric point is 6.44

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|I1SV89|I1SV89_9RHAB Matrix protein OS=Perinet vesiculovirus OX=1972569 PE=3 SV=1
MM1 pKa = 7.38SRR3 pKa = 11.84LLEE6 pKa = 4.18TFKK9 pKa = 11.09NYY11 pKa = 9.87PNLEE15 pKa = 3.99KK16 pKa = 10.38TMEE19 pKa = 4.72EE20 pKa = 3.92INDD23 pKa = 3.84IEE25 pKa = 5.14DD26 pKa = 3.48STSQEE31 pKa = 4.09EE32 pKa = 4.48KK33 pKa = 10.7KK34 pKa = 9.33VTLVLSEE41 pKa = 4.1EE42 pKa = 3.97PSYY45 pKa = 11.1FLAHH49 pKa = 6.32MLPSEE54 pKa = 4.04EE55 pKa = 5.41DD56 pKa = 3.33EE57 pKa = 4.21TDD59 pKa = 3.47EE60 pKa = 4.75EE61 pKa = 5.14GGGQVDD67 pKa = 3.64VNPYY71 pKa = 10.11EE72 pKa = 4.43DD73 pKa = 5.23AEE75 pKa = 4.36SSDD78 pKa = 3.67LNEE81 pKa = 5.58DD82 pKa = 3.49EE83 pKa = 5.95FEE85 pKa = 4.7VNFDD89 pKa = 3.78KK90 pKa = 11.28KK91 pKa = 10.32PWTALTEE98 pKa = 4.18KK99 pKa = 10.22VVKK102 pKa = 10.53GNIRR106 pKa = 11.84IDD108 pKa = 3.41MMHH111 pKa = 7.33PEE113 pKa = 4.69GLTDD117 pKa = 3.67AQFTQWVQGIQALLDD132 pKa = 3.6ISHH135 pKa = 6.81HH136 pKa = 6.19VDD138 pKa = 3.74LNRR141 pKa = 11.84LKK143 pKa = 10.83LGQTSDD149 pKa = 4.03GIVLIEE155 pKa = 4.5EE156 pKa = 4.28KK157 pKa = 10.11PKK159 pKa = 10.76RR160 pKa = 11.84PSSPSLKK167 pKa = 10.63LEE169 pKa = 4.1LKK171 pKa = 10.4EE172 pKa = 4.24FVSPDD177 pKa = 3.14SRR179 pKa = 11.84FGTPTDD185 pKa = 3.52NSSEE189 pKa = 4.25SSLGLPPTPEE199 pKa = 3.77KK200 pKa = 11.27VNWKK204 pKa = 7.61QTVEE208 pKa = 4.14IILEE212 pKa = 4.34VKK214 pKa = 10.53ALDD217 pKa = 4.36PDD219 pKa = 3.83LPSYY223 pKa = 9.29KK224 pKa = 8.35TTLSKK229 pKa = 11.12LFGSQEE235 pKa = 3.86AALQYY240 pKa = 10.49CNSGSPMLKK249 pKa = 10.14DD250 pKa = 3.67AFIAGLKK257 pKa = 10.11RR258 pKa = 11.84KK259 pKa = 10.18GIFNRR264 pKa = 11.84MRR266 pKa = 11.84TKK268 pKa = 10.89YY269 pKa = 10.28ILDD272 pKa = 3.59PTLPMM277 pKa = 5.19

Molecular weight: 31.26 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|I1SV90|I1SV90_9RHAB Glycoprotein OS=Perinet vesiculovirus OX=1972569 PE=3 SV=1
MM1 pKa = 7.32NRR3 pKa = 11.84IRR5 pKa = 11.84KK6 pKa = 8.49FWGSNKK12 pKa = 9.65NSQSPEE18 pKa = 3.86KK19 pKa = 10.28KK20 pKa = 9.91SKK22 pKa = 10.37KK23 pKa = 9.51KK24 pKa = 10.41KK25 pKa = 9.93KK26 pKa = 9.91NNNNHH31 pKa = 5.6GSQMEE36 pKa = 4.31WDD38 pKa = 3.88NPPTYY43 pKa = 10.73SEE45 pKa = 4.13AAKK48 pKa = 9.93FDD50 pKa = 3.71PSAPFFGLEE59 pKa = 4.03PEE61 pKa = 4.44DD62 pKa = 3.84MEE64 pKa = 4.52FNYY67 pKa = 10.64YY68 pKa = 10.43SGLASVKK75 pKa = 10.12LQYY78 pKa = 10.89KK79 pKa = 8.38CTIQVRR85 pKa = 11.84AKK87 pKa = 10.08KK88 pKa = 10.03PFVSFLDD95 pKa = 3.56AAEE98 pKa = 4.67NLSAWEE104 pKa = 3.92NNYY107 pKa = 10.78KK108 pKa = 10.7GFLGKK113 pKa = 10.36KK114 pKa = 7.74PFYY117 pKa = 10.13RR118 pKa = 11.84AIILTTLKK126 pKa = 10.27KK127 pKa = 10.73LKK129 pKa = 10.28VSPHH133 pKa = 6.3SLMDD137 pKa = 4.07GNAPEE142 pKa = 4.28YY143 pKa = 10.58NGEE146 pKa = 4.18SEE148 pKa = 4.42GRR150 pKa = 11.84CLILHH155 pKa = 6.23SLGIIPPMMYY165 pKa = 10.06VPEE168 pKa = 4.07QFTRR172 pKa = 11.84EE173 pKa = 3.47WSTRR177 pKa = 11.84DD178 pKa = 3.21NQGIISVRR186 pKa = 11.84ISVGITDD193 pKa = 3.7TVDD196 pKa = 3.1NLEE199 pKa = 4.6GLFSSPVFLDD209 pKa = 3.13HH210 pKa = 7.58KK211 pKa = 10.45EE212 pKa = 4.2LITAGRR218 pKa = 11.84MFNLDD223 pKa = 3.58LKK225 pKa = 11.0VSPEE229 pKa = 4.0NGWFISKK236 pKa = 10.23SYY238 pKa = 10.99

Molecular weight: 27.16 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

3458

238

2094

691.6

78.62

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.714 ± 0.765

1.764 ± 0.418

6.044 ± 0.525

5.726 ± 0.826

4.309 ± 0.255

5.87 ± 0.293

2.4 ± 0.247

6.449 ± 0.605

6.536 ± 0.565

9.919 ± 0.721

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.718 ± 0.407

4.685 ± 0.467

4.829 ± 0.852

3.21 ± 0.128

5.35 ± 0.742

8.618 ± 0.924

5.986 ± 0.588

5.552 ± 0.307

1.909 ± 0.189

3.412 ± 0.355
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski