Lynx canadensis faeces associated genomovirus CL3 128

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; unclassified Genomoviridae

Average proteome isoelectric point is 7.35

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2Z5CI23|A0A2Z5CI23_9VIRU Replication-associated protein OS=Lynx canadensis faeces associated genomovirus CL3 128 OX=2219129 PE=3 SV=1
MM1 pKa = 7.83APFFLKK7 pKa = 10.17NRR9 pKa = 11.84RR10 pKa = 11.84YY11 pKa = 10.97VMLTYY16 pKa = 10.52SQAGSDD22 pKa = 3.46FDD24 pKa = 3.5YY25 pKa = 10.94WSIVEE30 pKa = 4.47LLSSHH35 pKa = 6.0GAEE38 pKa = 4.28CIIGRR43 pKa = 11.84EE44 pKa = 4.02LHH46 pKa = 6.86ADD48 pKa = 3.64GGTHH52 pKa = 5.47FHH54 pKa = 6.24VFVDD58 pKa = 4.64FGRR61 pKa = 11.84LFQRR65 pKa = 11.84RR66 pKa = 11.84KK67 pKa = 8.43TDD69 pKa = 3.35LFDD72 pKa = 4.17VGGKK76 pKa = 9.23HH77 pKa = 6.12PNIMPVWKK85 pKa = 8.88TPGEE89 pKa = 4.12AFDD92 pKa = 4.3YY93 pKa = 8.57ATKK96 pKa = 10.85DD97 pKa = 3.15GDD99 pKa = 3.7IVAGGLEE106 pKa = 4.42RR107 pKa = 11.84PGTDD111 pKa = 3.49CDD113 pKa = 4.09YY114 pKa = 10.36DD115 pKa = 3.91TTNFWATAGASQSGEE130 pKa = 4.12EE131 pKa = 4.25FLHH134 pKa = 7.05FLDD137 pKa = 4.3QLAPRR142 pKa = 11.84DD143 pKa = 3.75LMRR146 pKa = 11.84GFLQFRR152 pKa = 11.84SYY154 pKa = 11.73ADD156 pKa = 3.41WKK158 pKa = 9.37WAVAPEE164 pKa = 4.45RR165 pKa = 11.84YY166 pKa = 9.28VDD168 pKa = 3.61PPGVVFDD175 pKa = 4.33TGHH178 pKa = 7.08AEE180 pKa = 3.85QLSEE184 pKa = 4.59RR185 pKa = 11.84KK186 pKa = 9.83SLMLWGPSQFGKK198 pKa = 6.66TTWARR203 pKa = 11.84SLGNHH208 pKa = 6.2IFFGSQFSGKK218 pKa = 9.73LALDD222 pKa = 4.0GMDD225 pKa = 3.8DD226 pKa = 3.34AQYY229 pKa = 11.33AIFDD233 pKa = 3.77DD234 pKa = 3.97WKK236 pKa = 10.99GGMKK240 pKa = 10.47ALPGYY245 pKa = 9.93KK246 pKa = 9.62DD247 pKa = 2.93WFGCQWQISVRR258 pKa = 11.84KK259 pKa = 8.42LHH261 pKa = 6.73HH262 pKa = 7.08DD263 pKa = 3.06ARR265 pKa = 11.84LITWGRR271 pKa = 11.84PIIWLCNKK279 pKa = 9.89DD280 pKa = 3.61PRR282 pKa = 11.84LMHH285 pKa = 6.99IATDD289 pKa = 3.82DD290 pKa = 4.26VDD292 pKa = 4.07WEE294 pKa = 4.3WMDD297 pKa = 3.67EE298 pKa = 3.69NVMFVEE304 pKa = 4.79IVRR307 pKa = 11.84PLVTFHH313 pKa = 7.37ANTT316 pKa = 3.62

Molecular weight: 36.24 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2Z5CI23|A0A2Z5CI23_9VIRU Replication-associated protein OS=Lynx canadensis faeces associated genomovirus CL3 128 OX=2219129 PE=3 SV=1
MM1 pKa = 7.83AYY3 pKa = 9.73KK4 pKa = 10.34SYY6 pKa = 11.19AKK8 pKa = 10.04RR9 pKa = 11.84RR10 pKa = 11.84PTRR13 pKa = 11.84RR14 pKa = 11.84SYY16 pKa = 10.39KK17 pKa = 9.4SKK19 pKa = 10.33RR20 pKa = 11.84RR21 pKa = 11.84SAPRR25 pKa = 11.84RR26 pKa = 11.84SYY28 pKa = 10.87AKK30 pKa = 10.01KK31 pKa = 10.08RR32 pKa = 11.84STFPSRR38 pKa = 11.84RR39 pKa = 11.84MSKK42 pKa = 10.44KK43 pKa = 9.98KK44 pKa = 9.74ILNVVSRR51 pKa = 11.84KK52 pKa = 9.29KK53 pKa = 10.47RR54 pKa = 11.84NGMMSWSNTTSSSGASQSIAAGNAVVAGNSGGTFLFSPTCMNLNQGTTSPNYY106 pKa = 9.95AINVAEE112 pKa = 4.33RR113 pKa = 11.84TATTCYY119 pKa = 9.81MKK121 pKa = 10.7GFKK124 pKa = 10.32EE125 pKa = 4.11NIRR128 pKa = 11.84IQTNSHH134 pKa = 6.26LPWFHH139 pKa = 6.69RR140 pKa = 11.84RR141 pKa = 11.84ICFRR145 pKa = 11.84YY146 pKa = 9.17RR147 pKa = 11.84GSGPFTTANPVDD159 pKa = 4.11TPTNTVTPYY168 pKa = 10.26IDD170 pKa = 3.37TSNGMEE176 pKa = 4.19RR177 pKa = 11.84LWLNQQVNNMPQTLVVLNQILFKK200 pKa = 10.95GSQNQDD206 pKa = 2.32WNDD209 pKa = 3.13IVIAPVDD216 pKa = 3.6TARR219 pKa = 11.84VDD221 pKa = 4.02LVFDD225 pKa = 3.76KK226 pKa = 10.78TWLIKK231 pKa = 10.64SGNEE235 pKa = 3.29TGTILEE241 pKa = 4.16RR242 pKa = 11.84KK243 pKa = 8.6LWHH246 pKa = 6.39GMNKK250 pKa = 9.72NLVFDD255 pKa = 4.85DD256 pKa = 4.7DD257 pKa = 5.07EE258 pKa = 6.25IGEE261 pKa = 4.57SMNSNYY267 pKa = 9.84FSVDD271 pKa = 2.98SKK273 pKa = 11.36RR274 pKa = 11.84GMGDD278 pKa = 3.13FYY280 pKa = 10.57IYY282 pKa = 10.43DD283 pKa = 3.6IVQPGLGGGATDD295 pKa = 6.39LISLSANSTMYY306 pKa = 9.46WHH308 pKa = 7.07EE309 pKa = 4.05KK310 pKa = 9.5

Molecular weight: 35.0 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

626

310

316

313.0

35.62

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.39 ± 0.608

1.118 ± 0.101

6.869 ± 1.579

3.355 ± 0.519

5.591 ± 1.154

8.147 ± 0.705

2.556 ± 0.849

4.633 ± 0.355

5.431 ± 0.685

6.709 ± 0.822

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.514 ± 0.239

5.272 ± 2.09

4.313 ± 0.08

3.355 ± 0.086

6.55 ± 0.584

7.348 ± 1.779

6.709 ± 1.126

5.431 ± 0.035

3.355 ± 0.736

3.355 ± 0.346
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski