Ranid herpesvirus 1 (strain McKinnell) (RaHV-1)

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Alloherpesviridae; Batrachovirus; Ranid herpesvirus 1

Average proteome isoelectric point is 7.18

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 132 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q9YQZ9|Q9YQZ9_RAHV1 ORF69 OS=Ranid herpesvirus 1 (strain McKinnell) OX=1283342 PE=4 SV=1
MM1 pKa = 7.49EE2 pKa = 5.64SSLEE6 pKa = 3.97MSSEE10 pKa = 3.96DD11 pKa = 4.0QEE13 pKa = 4.87NIAAGHH19 pKa = 6.88EE20 pKa = 3.99IQIIADD26 pKa = 3.48AFVSNGYY33 pKa = 10.26LSRR36 pKa = 11.84TQAFMATCVGMLMASIGQEE55 pKa = 3.89FEE57 pKa = 3.7AAEE60 pKa = 4.24PRR62 pKa = 11.84DD63 pKa = 3.86VDD65 pKa = 4.11YY66 pKa = 11.01MFDD69 pKa = 3.73DD70 pKa = 4.06RR71 pKa = 11.84TDD73 pKa = 3.37EE74 pKa = 4.8AVDD77 pKa = 3.56HH78 pKa = 6.11MLHH81 pKa = 7.07LFLDD85 pKa = 4.8DD86 pKa = 4.3AAHH89 pKa = 7.27AYY91 pKa = 8.89AKK93 pKa = 10.78CEE95 pKa = 3.96LDD97 pKa = 3.33EE98 pKa = 4.54FLAGSAEE105 pKa = 4.04EE106 pKa = 4.16QEE108 pKa = 4.47RR109 pKa = 11.84EE110 pKa = 3.95LAEE113 pKa = 4.29EE114 pKa = 4.58GSVIVEE120 pKa = 4.81DD121 pKa = 4.3YY122 pKa = 10.95PLTDD126 pKa = 3.09VTGFAVFTPSSDD138 pKa = 3.29APIVIVGVCKK148 pKa = 9.84DD149 pKa = 3.63TSWRR153 pKa = 11.84HH154 pKa = 4.82ADD156 pKa = 3.05IANLVHH162 pKa = 6.65RR163 pKa = 11.84VLMSS167 pKa = 3.57

Molecular weight: 18.4 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q14VR3|Q14VR3_RAHV1 ORF45 OS=Ranid herpesvirus 1 (strain McKinnell) OX=1283342 PE=4 SV=1
MM1 pKa = 7.32SRR3 pKa = 11.84LMLTGVRR10 pKa = 11.84PSASPVSMHH19 pKa = 6.32TPAAHH24 pKa = 6.69CAPSSSAVVHH34 pKa = 5.82LHH36 pKa = 5.79SAAIHH41 pKa = 4.97MAKK44 pKa = 10.16AVSTCPGARR53 pKa = 11.84SKK55 pKa = 10.94AARR58 pKa = 11.84NSSLIGSTNRR68 pKa = 11.84LPTQPITSAHH78 pKa = 6.35IPRR81 pKa = 11.84TSGDD85 pKa = 3.14TSSPPNSSTILATYY99 pKa = 9.11KK100 pKa = 10.65ARR102 pKa = 11.84AISSNDD108 pKa = 2.51IPRR111 pKa = 11.84FYY113 pKa = 10.92GGRR116 pKa = 11.84YY117 pKa = 6.2TRR119 pKa = 11.84ARR121 pKa = 11.84EE122 pKa = 3.46QAQYY126 pKa = 10.65AKK128 pKa = 9.9HH129 pKa = 5.37GVGMPRR135 pKa = 11.84RR136 pKa = 11.84LRR138 pKa = 11.84AALWDD143 pKa = 3.66RR144 pKa = 11.84TVCSAHH150 pKa = 6.95RR151 pKa = 11.84RR152 pKa = 11.84ILCAFWEE159 pKa = 4.4AMNVLYY165 pKa = 10.54KK166 pKa = 11.15DD167 pKa = 3.94NLDD170 pKa = 3.75SLALHH175 pKa = 6.48YY176 pKa = 10.92YY177 pKa = 10.54SLTSQCLSLRR187 pKa = 11.84TTAEE191 pKa = 3.79SSTVFALRR199 pKa = 11.84RR200 pKa = 11.84ALGMPDD206 pKa = 3.49PANSFHH212 pKa = 6.2QAVARR217 pKa = 11.84LHH219 pKa = 6.12CTTSVPYY226 pKa = 7.93TTTTFTHH233 pKa = 6.72KK234 pKa = 9.92PDD236 pKa = 4.36PPHH239 pKa = 6.59PRR241 pKa = 11.84PDD243 pKa = 4.7RR244 pKa = 11.84IHH246 pKa = 6.66CALYY250 pKa = 10.51VPPTNKK256 pKa = 10.17APVWEE261 pKa = 4.56TKK263 pKa = 7.35TEE265 pKa = 3.98RR266 pKa = 11.84LVWVSALVLLAAQGDD281 pKa = 4.23TALLAAQASFLAWTARR297 pKa = 11.84TIIPFF302 pKa = 3.75

Molecular weight: 32.92 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

132

0

132

59898

110

3149

453.8

50.39

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.02 ± 0.18

3.257 ± 0.156

4.282 ± 0.133

5.164 ± 0.226

2.873 ± 0.114

5.748 ± 0.132

3.655 ± 0.096

3.706 ± 0.135

2.841 ± 0.114

9.585 ± 0.261

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.523 ± 0.1

3.251 ± 0.093

6.625 ± 0.442

3.78 ± 0.16

7.433 ± 0.163

6.611 ± 0.361

6.84 ± 0.179

6.92 ± 0.179

1.362 ± 0.074

3.524 ± 0.103
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski