Amino acid dipepetide frequency for Sclerotinia sclerotiorum endornavirus 2

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
2.603AlaAla: 2.603 ± 0.0
0.868AlaCys: 0.868 ± 0.0
2.313AlaAsp: 2.313 ± 0.0
2.024AlaGlu: 2.024 ± 0.0
1.157AlaPhe: 1.157 ± 0.0
2.313AlaGly: 2.313 ± 0.0
1.446AlaHis: 1.446 ± 0.0
4.916AlaIle: 4.916 ± 0.0
2.313AlaLys: 2.313 ± 0.0
5.495AlaLeu: 5.495 ± 0.0
0.868AlaMet: 0.868 ± 0.0
4.338AlaAsn: 4.338 ± 0.0
1.446AlaPro: 1.446 ± 0.0
2.603AlaGln: 2.603 ± 0.0
3.47AlaArg: 3.47 ± 0.0
4.916AlaSer: 4.916 ± 0.0
4.338AlaThr: 4.338 ± 0.0
3.181AlaVal: 3.181 ± 0.0
0.578AlaTrp: 0.578 ± 0.0
1.446AlaTyr: 1.446 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
2.603CysAla: 2.603 ± 0.0
1.446CysCys: 1.446 ± 0.0
0.289CysAsp: 0.289 ± 0.0
0.578CysGlu: 0.578 ± 0.0
0.0CysPhe: 0.0 ± 0.0
1.735CysGly: 1.735 ± 0.0
1.157CysHis: 1.157 ± 0.0
2.892CysIle: 2.892 ± 0.0
1.735CysLys: 1.735 ± 0.0
1.157CysLeu: 1.157 ± 0.0
0.289CysMet: 0.289 ± 0.0
0.868CysAsn: 0.868 ± 0.0
1.446CysPro: 1.446 ± 0.0
1.157CysGln: 1.157 ± 0.0
0.0CysArg: 0.0 ± 0.0
1.735CysSer: 1.735 ± 0.0
1.157CysThr: 1.157 ± 0.0
1.157CysVal: 1.157 ± 0.0
0.289CysTrp: 0.289 ± 0.0
1.157CysTyr: 1.157 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
3.759AspAla: 3.759 ± 0.0
0.578AspCys: 0.578 ± 0.0
4.338AspAsp: 4.338 ± 0.0
3.759AspGlu: 3.759 ± 0.0
1.446AspPhe: 1.446 ± 0.0
3.47AspGly: 3.47 ± 0.0
1.157AspHis: 1.157 ± 0.0
8.386AspIle: 8.386 ± 0.0
3.47AspLys: 3.47 ± 0.0
5.205AspLeu: 5.205 ± 0.0
1.157AspMet: 1.157 ± 0.0
4.916AspAsn: 4.916 ± 0.0
1.735AspPro: 1.735 ± 0.0
2.603AspGln: 2.603 ± 0.0
1.446AspArg: 1.446 ± 0.0
4.338AspSer: 4.338 ± 0.0
4.049AspThr: 4.049 ± 0.0
6.362AspVal: 6.362 ± 0.0
1.735AspTrp: 1.735 ± 0.0
2.603AspTyr: 2.603 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
1.446GluAla: 1.446 ± 0.0
1.446GluCys: 1.446 ± 0.0
2.313GluAsp: 2.313 ± 0.0
2.313GluGlu: 2.313 ± 0.0
2.313GluPhe: 2.313 ± 0.0
1.735GluGly: 1.735 ± 0.0
2.313GluHis: 2.313 ± 0.0
3.47GluIle: 3.47 ± 0.0
3.181GluLys: 3.181 ± 0.0
3.47GluLeu: 3.47 ± 0.0
1.446GluMet: 1.446 ± 0.0
2.313GluAsn: 2.313 ± 0.0
0.868GluPro: 0.868 ± 0.0
3.47GluGln: 3.47 ± 0.0
0.868GluArg: 0.868 ± 0.0
3.47GluSer: 3.47 ± 0.0
2.892GluThr: 2.892 ± 0.0
3.47GluVal: 3.47 ± 0.0
0.868GluTrp: 0.868 ± 0.0
1.157GluTyr: 1.157 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
1.446PheAla: 1.446 ± 0.0
0.289PheCys: 0.289 ± 0.0
3.181PheAsp: 3.181 ± 0.0
0.868PheGlu: 0.868 ± 0.0
0.868PhePhe: 0.868 ± 0.0
2.313PheGly: 2.313 ± 0.0
0.868PheHis: 0.868 ± 0.0
2.603PheIle: 2.603 ± 0.0
2.024PheLys: 2.024 ± 0.0
1.157PheLeu: 1.157 ± 0.0
1.157PheMet: 1.157 ± 0.0
2.892PheAsn: 2.892 ± 0.0
0.289PhePro: 0.289 ± 0.0
0.578PheGln: 0.578 ± 0.0
0.868PheArg: 0.868 ± 0.0
1.157PheSer: 1.157 ± 0.0
2.603PheThr: 2.603 ± 0.0
2.024PheVal: 2.024 ± 0.0
0.0PheTrp: 0.0 ± 0.0
0.868PheTyr: 0.868 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
2.313GlyAla: 2.313 ± 0.0
0.868GlyCys: 0.868 ± 0.0
4.049GlyAsp: 4.049 ± 0.0
1.735GlyGlu: 1.735 ± 0.0
1.446GlyPhe: 1.446 ± 0.0
3.759GlyGly: 3.759 ± 0.0
1.157GlyHis: 1.157 ± 0.0
3.759GlyIle: 3.759 ± 0.0
3.47GlyLys: 3.47 ± 0.0
3.47GlyLeu: 3.47 ± 0.0
1.446GlyMet: 1.446 ± 0.0
4.627GlyAsn: 4.627 ± 0.0
1.446GlyPro: 1.446 ± 0.0
2.313GlyGln: 2.313 ± 0.0
2.892GlyArg: 2.892 ± 0.0
3.759GlySer: 3.759 ± 0.0
4.916GlyThr: 4.916 ± 0.0
3.181GlyVal: 3.181 ± 0.0
0.578GlyTrp: 0.578 ± 0.0
2.892GlyTyr: 2.892 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
1.446HisAla: 1.446 ± 0.0
0.289HisCys: 0.289 ± 0.0
0.578HisAsp: 0.578 ± 0.0
2.313HisGlu: 2.313 ± 0.0
0.868HisPhe: 0.868 ± 0.0
2.313HisGly: 2.313 ± 0.0
0.868HisHis: 0.868 ± 0.0
2.603HisIle: 2.603 ± 0.0
1.157HisLys: 1.157 ± 0.0
4.049HisLeu: 4.049 ± 0.0
0.289HisMet: 0.289 ± 0.0
2.313HisAsn: 2.313 ± 0.0
1.446HisPro: 1.446 ± 0.0
0.578HisGln: 0.578 ± 0.0
0.578HisArg: 0.578 ± 0.0
2.892HisSer: 2.892 ± 0.0
0.578HisThr: 0.578 ± 0.0
0.578HisVal: 0.578 ± 0.0
1.157HisTrp: 1.157 ± 0.0
2.024HisTyr: 2.024 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
3.759IleAla: 3.759 ± 0.0
2.603IleCys: 2.603 ± 0.0
6.651IleAsp: 6.651 ± 0.0
4.338IleGlu: 4.338 ± 0.0
1.735IlePhe: 1.735 ± 0.0
5.495IleGly: 5.495 ± 0.0
2.313IleHis: 2.313 ± 0.0
6.073IleIle: 6.073 ± 0.0
6.94IleLys: 6.94 ± 0.0
5.205IleLeu: 5.205 ± 0.0
2.024IleMet: 2.024 ± 0.0
7.23IleAsn: 7.23 ± 0.0
2.313IlePro: 2.313 ± 0.0
2.892IleGln: 2.892 ± 0.0
2.024IleArg: 2.024 ± 0.0
6.651IleSer: 6.651 ± 0.0
5.784IleThr: 5.784 ± 0.0
4.627IleVal: 4.627 ± 0.0
0.289IleTrp: 0.289 ± 0.0
3.759IleTyr: 3.759 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
2.024LysAla: 2.024 ± 0.0
1.446LysCys: 1.446 ± 0.0
3.47LysAsp: 3.47 ± 0.0
3.181LysGlu: 3.181 ± 0.0
3.181LysPhe: 3.181 ± 0.0
1.735LysGly: 1.735 ± 0.0
2.313LysHis: 2.313 ± 0.0
3.47LysIle: 3.47 ± 0.0
4.049LysLys: 4.049 ± 0.0
7.519LysLeu: 7.519 ± 0.0
2.024LysMet: 2.024 ± 0.0
5.495LysAsn: 5.495 ± 0.0
4.049LysPro: 4.049 ± 0.0
2.024LysGln: 2.024 ± 0.0
1.157LysArg: 1.157 ± 0.0
3.47LysSer: 3.47 ± 0.0
3.47LysThr: 3.47 ± 0.0
2.892LysVal: 2.892 ± 0.0
2.024LysTrp: 2.024 ± 0.0
2.892LysTyr: 2.892 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
4.916LeuAla: 4.916 ± 0.0
2.024LeuCys: 2.024 ± 0.0
4.916LeuAsp: 4.916 ± 0.0
3.181LeuGlu: 3.181 ± 0.0
3.181LeuPhe: 3.181 ± 0.0
4.338LeuGly: 4.338 ± 0.0
1.735LeuHis: 1.735 ± 0.0
7.519LeuIle: 7.519 ± 0.0
4.916LeuLys: 4.916 ± 0.0
8.097LeuLeu: 8.097 ± 0.0
3.47LeuMet: 3.47 ± 0.0
6.651LeuAsn: 6.651 ± 0.0
5.495LeuPro: 5.495 ± 0.0
1.735LeuGln: 1.735 ± 0.0
3.47LeuArg: 3.47 ± 0.0
5.784LeuSer: 5.784 ± 0.0
7.808LeuThr: 7.808 ± 0.0
4.049LeuVal: 4.049 ± 0.0
1.446LeuTrp: 1.446 ± 0.0
4.049LeuTyr: 4.049 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
0.578MetAla: 0.578 ± 0.0
0.289MetCys: 0.289 ± 0.0
1.157MetAsp: 1.157 ± 0.0
1.157MetGlu: 1.157 ± 0.0
0.868MetPhe: 0.868 ± 0.0
2.313MetGly: 2.313 ± 0.0
0.289MetHis: 0.289 ± 0.0
2.024MetIle: 2.024 ± 0.0
1.735MetLys: 1.735 ± 0.0
1.735MetLeu: 1.735 ± 0.0
0.578MetMet: 0.578 ± 0.0
2.603MetAsn: 2.603 ± 0.0
1.735MetPro: 1.735 ± 0.0
0.289MetGln: 0.289 ± 0.0
1.735MetArg: 1.735 ± 0.0
1.446MetSer: 1.446 ± 0.0
4.049MetThr: 4.049 ± 0.0
1.735MetVal: 1.735 ± 0.0
0.289MetTrp: 0.289 ± 0.0
0.289MetTyr: 0.289 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
4.627AsnAla: 4.627 ± 0.0
2.024AsnCys: 2.024 ± 0.0
5.495AsnAsp: 5.495 ± 0.0
5.784AsnGlu: 5.784 ± 0.0
1.157AsnPhe: 1.157 ± 0.0
3.181AsnGly: 3.181 ± 0.0
2.024AsnHis: 2.024 ± 0.0
7.808AsnIle: 7.808 ± 0.0
6.651AsnLys: 6.651 ± 0.0
5.205AsnLeu: 5.205 ± 0.0
2.603AsnMet: 2.603 ± 0.0
5.495AsnAsn: 5.495 ± 0.0
2.313AsnPro: 2.313 ± 0.0
2.024AsnGln: 2.024 ± 0.0
2.603AsnArg: 2.603 ± 0.0
5.784AsnSer: 5.784 ± 0.0
5.205AsnThr: 5.205 ± 0.0
2.892AsnVal: 2.892 ± 0.0
0.578AsnTrp: 0.578 ± 0.0
3.759AsnTyr: 3.759 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
1.446ProAla: 1.446 ± 0.0
1.446ProCys: 1.446 ± 0.0
3.181ProAsp: 3.181 ± 0.0
1.735ProGlu: 1.735 ± 0.0
0.578ProPhe: 0.578 ± 0.0
2.024ProGly: 2.024 ± 0.0
1.446ProHis: 1.446 ± 0.0
2.024ProIle: 2.024 ± 0.0
1.446ProLys: 1.446 ± 0.0
3.47ProLeu: 3.47 ± 0.0
0.0ProMet: 0.0 ± 0.0
3.759ProAsn: 3.759 ± 0.0
2.024ProPro: 2.024 ± 0.0
0.578ProGln: 0.578 ± 0.0
1.157ProArg: 1.157 ± 0.0
1.735ProSer: 1.735 ± 0.0
4.338ProThr: 4.338 ± 0.0
2.024ProVal: 2.024 ± 0.0
0.0ProTrp: 0.0 ± 0.0
0.578ProTyr: 0.578 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
2.603GlnAla: 2.603 ± 0.0
1.446GlnCys: 1.446 ± 0.0
1.735GlnAsp: 1.735 ± 0.0
1.446GlnGlu: 1.446 ± 0.0
1.735GlnPhe: 1.735 ± 0.0
1.446GlnGly: 1.446 ± 0.0
0.868GlnHis: 0.868 ± 0.0
3.181GlnIle: 3.181 ± 0.0
1.157GlnLys: 1.157 ± 0.0
4.916GlnLeu: 4.916 ± 0.0
1.446GlnMet: 1.446 ± 0.0
1.157GlnAsn: 1.157 ± 0.0
1.157GlnPro: 1.157 ± 0.0
0.868GlnGln: 0.868 ± 0.0
1.735GlnArg: 1.735 ± 0.0
2.024GlnSer: 2.024 ± 0.0
1.157GlnThr: 1.157 ± 0.0
2.892GlnVal: 2.892 ± 0.0
0.0GlnTrp: 0.0 ± 0.0
1.446GlnTyr: 1.446 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
2.313ArgAla: 2.313 ± 0.0
0.578ArgCys: 0.578 ± 0.0
1.446ArgAsp: 1.446 ± 0.0
1.446ArgGlu: 1.446 ± 0.0
2.313ArgPhe: 2.313 ± 0.0
1.735ArgGly: 1.735 ± 0.0
1.157ArgHis: 1.157 ± 0.0
2.603ArgIle: 2.603 ± 0.0
1.446ArgLys: 1.446 ± 0.0
5.495ArgLeu: 5.495 ± 0.0
0.868ArgMet: 0.868 ± 0.0
2.603ArgAsn: 2.603 ± 0.0
0.289ArgPro: 0.289 ± 0.0
0.868ArgGln: 0.868 ± 0.0
1.446ArgArg: 1.446 ± 0.0
3.47ArgSer: 3.47 ± 0.0
1.446ArgThr: 1.446 ± 0.0
2.313ArgVal: 2.313 ± 0.0
0.289ArgTrp: 0.289 ± 0.0
0.578ArgTyr: 0.578 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
3.181SerAla: 3.181 ± 0.0
1.157SerCys: 1.157 ± 0.0
5.205SerAsp: 5.205 ± 0.0
1.735SerGlu: 1.735 ± 0.0
1.735SerPhe: 1.735 ± 0.0
4.916SerGly: 4.916 ± 0.0
1.446SerHis: 1.446 ± 0.0
4.627SerIle: 4.627 ± 0.0
6.073SerLys: 6.073 ± 0.0
6.94SerLeu: 6.94 ± 0.0
1.735SerMet: 1.735 ± 0.0
4.049SerAsn: 4.049 ± 0.0
2.024SerPro: 2.024 ± 0.0
2.892SerGln: 2.892 ± 0.0
2.603SerArg: 2.603 ± 0.0
4.049SerSer: 4.049 ± 0.0
4.916SerThr: 4.916 ± 0.0
6.651SerVal: 6.651 ± 0.0
0.578SerTrp: 0.578 ± 0.0
4.049SerTyr: 4.049 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
1.446ThrAla: 1.446 ± 0.0
2.024ThrCys: 2.024 ± 0.0
4.916ThrAsp: 4.916 ± 0.0
1.735ThrGlu: 1.735 ± 0.0
1.446ThrPhe: 1.446 ± 0.0
4.049ThrGly: 4.049 ± 0.0
2.892ThrHis: 2.892 ± 0.0
7.23ThrIle: 7.23 ± 0.0
3.759ThrLys: 3.759 ± 0.0
4.916ThrLeu: 4.916 ± 0.0
2.892ThrMet: 2.892 ± 0.0
6.651ThrAsn: 6.651 ± 0.0
1.735ThrPro: 1.735 ± 0.0
4.049ThrGln: 4.049 ± 0.0
2.313ThrArg: 2.313 ± 0.0
4.916ThrSer: 4.916 ± 0.0
7.519ThrThr: 7.519 ± 0.0
5.205ThrVal: 5.205 ± 0.0
1.446ThrTrp: 1.446 ± 0.0
2.603ThrTyr: 2.603 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
5.784ValAla: 5.784 ± 0.0
0.868ValCys: 0.868 ± 0.0
7.23ValAsp: 7.23 ± 0.0
2.603ValGlu: 2.603 ± 0.0
1.157ValPhe: 1.157 ± 0.0
4.049ValGly: 4.049 ± 0.0
2.024ValHis: 2.024 ± 0.0
4.049ValIle: 4.049 ± 0.0
2.313ValLys: 2.313 ± 0.0
4.627ValLeu: 4.627 ± 0.0
1.735ValMet: 1.735 ± 0.0
5.205ValAsn: 5.205 ± 0.0
2.313ValPro: 2.313 ± 0.0
1.157ValGln: 1.157 ± 0.0
2.603ValArg: 2.603 ± 0.0
3.47ValSer: 3.47 ± 0.0
4.049ValThr: 4.049 ± 0.0
4.627ValVal: 4.627 ± 0.0
0.289ValTrp: 0.289 ± 0.0
2.603ValTyr: 2.603 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
0.578TrpAla: 0.578 ± 0.0
0.289TrpCys: 0.289 ± 0.0
1.157TrpAsp: 1.157 ± 0.0
0.578TrpGlu: 0.578 ± 0.0
0.868TrpPhe: 0.868 ± 0.0
0.0TrpGly: 0.0 ± 0.0
0.578TrpHis: 0.578 ± 0.0
0.289TrpIle: 0.289 ± 0.0
1.157TrpLys: 1.157 ± 0.0
2.603TrpLeu: 2.603 ± 0.0
0.0TrpMet: 0.0 ± 0.0
0.868TrpAsn: 0.868 ± 0.0
0.289TrpPro: 0.289 ± 0.0
1.157TrpGln: 1.157 ± 0.0
0.289TrpArg: 0.289 ± 0.0
0.868TrpSer: 0.868 ± 0.0
0.578TrpThr: 0.578 ± 0.0
0.578TrpVal: 0.578 ± 0.0
0.578TrpTrp: 0.578 ± 0.0
0.289TrpTyr: 0.289 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
3.759TyrAla: 3.759 ± 0.0
0.868TyrCys: 0.868 ± 0.0
2.892TyrAsp: 2.892 ± 0.0
2.313TyrGlu: 2.313 ± 0.0
0.0TyrPhe: 0.0 ± 0.0
1.157TyrGly: 1.157 ± 0.0
0.868TyrHis: 0.868 ± 0.0
3.181TyrIle: 3.181 ± 0.0
2.892TyrLys: 2.892 ± 0.0
4.049TyrLeu: 4.049 ± 0.0
0.578TyrMet: 0.578 ± 0.0
3.181TyrAsn: 3.181 ± 0.0
0.578TyrPro: 0.578 ± 0.0
0.578TyrGln: 0.578 ± 0.0
1.446TyrArg: 1.446 ± 0.0
4.627TyrSer: 4.627 ± 0.0
3.181TyrThr: 3.181 ± 0.0
2.313TyrVal: 2.313 ± 0.0
0.578TyrTrp: 0.578 ± 0.0
0.868TyrTyr: 0.868 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (3459 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski