Cassava vein mosaic virus (CsVMV)

Taxonomy: Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Cavemovirus

Average proteome isoelectric point is 7.44

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    

Protein with the lowest isoelectric point:
>sp|Q66284|IBMP_CSVMV Putative transactivator/viroplasmin protein OS=Cassava vein mosaic virus OX=38062 GN=ORF 4 PE=3 SV=1
MM1 pKa = 8.0DD2 pKa = 5.4SKK4 pKa = 11.67DD5 pKa = 3.52FTQLNLEE12 pKa = 4.03EE13 pKa = 4.68HH14 pKa = 6.26SYY16 pKa = 10.51KK17 pKa = 10.57VNRR20 pKa = 11.84EE21 pKa = 3.75KK22 pKa = 11.23LPIDD26 pKa = 4.01SYY28 pKa = 10.55IQYY31 pKa = 11.16GGFTYY36 pKa = 11.08ANFTPYY42 pKa = 9.93IIHH45 pKa = 7.1GDD47 pKa = 3.72DD48 pKa = 3.58GFGEE52 pKa = 4.33HH53 pKa = 6.9KK54 pKa = 10.19QLNWTNKK61 pKa = 10.14LLWNKK66 pKa = 9.84LGKK69 pKa = 10.6LNIKK73 pKa = 8.6DD74 pKa = 3.91TQILMQNNISEE85 pKa = 4.35EE86 pKa = 3.92QHH88 pKa = 6.18NEE90 pKa = 4.18LISLEE95 pKa = 4.05AQKK98 pKa = 10.38IARR101 pKa = 11.84EE102 pKa = 3.88NLADD106 pKa = 5.82RR107 pKa = 11.84INYY110 pKa = 7.52LQNINTSIDD119 pKa = 3.41FKK121 pKa = 10.33LWKK124 pKa = 9.16MNKK127 pKa = 9.35EE128 pKa = 3.71NLEE131 pKa = 4.04RR132 pKa = 11.84QEE134 pKa = 4.16LLLRR138 pKa = 11.84QINEE142 pKa = 3.93LKK144 pKa = 10.98EE145 pKa = 4.17EE146 pKa = 4.08IKK148 pKa = 10.63SLKK151 pKa = 10.22NIPSTVAIIPTNTYY165 pKa = 7.99TINMIRR171 pKa = 11.84TEE173 pKa = 4.19TEE175 pKa = 3.07DD176 pKa = 2.92WKK178 pKa = 10.29YY179 pKa = 10.88FKK181 pKa = 10.89YY182 pKa = 10.16IEE184 pKa = 4.65KK185 pKa = 10.56EE186 pKa = 3.78LVQNKK191 pKa = 8.4TEE193 pKa = 4.8AIAKK197 pKa = 9.82ILDD200 pKa = 3.23NSYY203 pKa = 10.65IINDD207 pKa = 3.75NLGLLYY213 pKa = 10.43EE214 pKa = 4.73RR215 pKa = 11.84YY216 pKa = 10.1EE217 pKa = 4.55EE218 pKa = 4.43INPTPKK224 pKa = 9.92PYY226 pKa = 10.19KK227 pKa = 9.83RR228 pKa = 11.84PEE230 pKa = 4.31TIFDD234 pKa = 3.53TPQYY238 pKa = 11.06AKK240 pKa = 10.72YY241 pKa = 10.15IRR243 pKa = 11.84NQKK246 pKa = 9.16RR247 pKa = 11.84QEE249 pKa = 4.1EE250 pKa = 4.62YY251 pKa = 10.83EE252 pKa = 4.09KK253 pKa = 10.66QQEE256 pKa = 4.12LKK258 pKa = 10.73KK259 pKa = 10.44EE260 pKa = 4.17NEE262 pKa = 3.82NKK264 pKa = 10.14EE265 pKa = 4.04YY266 pKa = 10.99QEE268 pKa = 3.77FLEE271 pKa = 4.47WKK273 pKa = 9.86EE274 pKa = 3.91KK275 pKa = 7.27QQKK278 pKa = 10.48DD279 pKa = 3.39KK280 pKa = 11.57GKK282 pKa = 10.63GIQTVYY288 pKa = 8.34PTLIIPDD295 pKa = 4.13IKK297 pKa = 10.67PEE299 pKa = 4.04KK300 pKa = 9.43QKK302 pKa = 11.13KK303 pKa = 8.1EE304 pKa = 3.92DD305 pKa = 3.7MMLEE309 pKa = 4.18MIKK312 pKa = 10.42NLQNEE317 pKa = 4.6LEE319 pKa = 3.95QLKK322 pKa = 9.62IQRR325 pKa = 11.84HH326 pKa = 5.13KK327 pKa = 10.42EE328 pKa = 3.82HH329 pKa = 6.96EE330 pKa = 4.29KK331 pKa = 10.2QAEE334 pKa = 4.12LTKK337 pKa = 10.41IQMLEE342 pKa = 3.99EE343 pKa = 4.05EE344 pKa = 5.04LEE346 pKa = 4.28EE347 pKa = 5.24EE348 pKa = 4.56LDD350 pKa = 3.71PDD352 pKa = 3.82NLEE355 pKa = 4.61KK356 pKa = 10.76EE357 pKa = 4.5VLNNIQNIQISSDD370 pKa = 2.79ISEE373 pKa = 3.88SSEE376 pKa = 3.54INEE379 pKa = 3.85ISDD382 pKa = 3.79NEE384 pKa = 4.28TEE386 pKa = 4.38QISGSDD392 pKa = 2.76SDD394 pKa = 4.54YY395 pKa = 11.55NNEE398 pKa = 3.96QINVKK403 pKa = 10.06IEE405 pKa = 3.95GEE407 pKa = 3.99EE408 pKa = 3.91YY409 pKa = 10.16EE410 pKa = 4.54YY411 pKa = 11.24KK412 pKa = 10.8DD413 pKa = 2.89NYY415 pKa = 10.44RR416 pKa = 11.84YY417 pKa = 10.1YY418 pKa = 10.69KK419 pKa = 9.43PQPPYY424 pKa = 8.89YY425 pKa = 9.84KK426 pKa = 10.03KK427 pKa = 10.41DD428 pKa = 3.07IRR430 pKa = 11.84RR431 pKa = 11.84EE432 pKa = 3.8RR433 pKa = 11.84QYY435 pKa = 11.22KK436 pKa = 8.57GQSSQRR442 pKa = 11.84ADD444 pKa = 3.44YY445 pKa = 10.5IKK447 pKa = 10.61NRR449 pKa = 11.84RR450 pKa = 11.84EE451 pKa = 4.05QFEE454 pKa = 4.3STYY457 pKa = 9.21QANMNTTINDD467 pKa = 3.23SGEE470 pKa = 4.08ILNLDD475 pKa = 3.48CTTPEE480 pKa = 3.86EE481 pKa = 4.73AEE483 pKa = 4.53DD484 pKa = 5.52RR485 pKa = 11.84IQKK488 pKa = 6.85WTQSMSIALVKK499 pKa = 10.31QQLSNEE505 pKa = 4.0QAKK508 pKa = 9.86QFIRR512 pKa = 11.84RR513 pKa = 11.84TFIGNVKK520 pKa = 9.17EE521 pKa = 4.18WYY523 pKa = 10.1KK524 pKa = 11.34NLTNEE529 pKa = 4.59AKK531 pKa = 10.29QKK533 pKa = 11.15LEE535 pKa = 3.95GNAPLLSLTHH545 pKa = 6.13MEE547 pKa = 4.19LGLRR551 pKa = 11.84AEE553 pKa = 4.31FGKK556 pKa = 10.84LGIEE560 pKa = 4.16SDD562 pKa = 4.0VEE564 pKa = 3.96KK565 pKa = 10.86HH566 pKa = 5.35EE567 pKa = 4.61KK568 pKa = 7.8KK569 pKa = 9.44TSIARR574 pKa = 11.84HH575 pKa = 6.34KK576 pKa = 10.31ILQLQICSMDD586 pKa = 3.53HH587 pKa = 6.0QNLNAYY593 pKa = 9.55LCEE596 pKa = 3.94FQEE599 pKa = 4.71YY600 pKa = 9.5YY601 pKa = 11.06YY602 pKa = 10.74SANYY606 pKa = 8.88TEE608 pKa = 5.48AEE610 pKa = 4.22SEE612 pKa = 4.24NILNMFYY619 pKa = 11.07SKK621 pKa = 10.77LPEE624 pKa = 3.94PWGQQVLNGYY634 pKa = 9.97LSEE637 pKa = 4.24IKK639 pKa = 10.52GKK641 pKa = 9.99NLLDD645 pKa = 4.18SIGARR650 pKa = 11.84MTYY653 pKa = 9.74LQEE656 pKa = 4.86FISDD660 pKa = 3.49KK661 pKa = 11.14CKK663 pKa = 10.88EE664 pKa = 3.83NWTQKK669 pKa = 7.57QARR672 pKa = 11.84KK673 pKa = 9.02IQLSKK678 pKa = 11.25NLDD681 pKa = 3.19CSYY684 pKa = 11.45YY685 pKa = 10.15EE686 pKa = 3.95VGKK689 pKa = 10.44YY690 pKa = 9.46GCKK693 pKa = 9.8QIRR696 pKa = 11.84PHH698 pKa = 5.92KK699 pKa = 9.75RR700 pKa = 11.84KK701 pKa = 9.78RR702 pKa = 11.84YY703 pKa = 7.1YY704 pKa = 10.49KK705 pKa = 10.15KK706 pKa = 10.49YY707 pKa = 9.82IPIKK711 pKa = 10.06RR712 pKa = 11.84KK713 pKa = 8.95YY714 pKa = 9.73FNKK717 pKa = 9.67KK718 pKa = 9.26RR719 pKa = 11.84YY720 pKa = 8.41KK721 pKa = 10.14KK722 pKa = 10.06YY723 pKa = 9.82YY724 pKa = 9.32RR725 pKa = 11.84PKK727 pKa = 10.68KK728 pKa = 9.28FLKK731 pKa = 10.27RR732 pKa = 11.84KK733 pKa = 9.44NPHH736 pKa = 6.39KK737 pKa = 10.71ACKK740 pKa = 9.94CYY742 pKa = 9.85NCGEE746 pKa = 4.34EE747 pKa = 4.31GHH749 pKa = 6.84ISPNCKK755 pKa = 9.78KK756 pKa = 9.79PKK758 pKa = 9.8KK759 pKa = 8.8KK760 pKa = 8.88TRR762 pKa = 11.84INNLEE767 pKa = 3.73ALEE770 pKa = 4.19FKK772 pKa = 9.47NTEE775 pKa = 3.87MEE777 pKa = 4.09NLEE780 pKa = 4.4FEE782 pKa = 4.56TNKK785 pKa = 10.26NDD787 pKa = 4.09IIWVEE792 pKa = 4.44EE793 pKa = 4.03IEE795 pKa = 4.79VIQPLHH801 pKa = 6.99YY802 pKa = 10.68EE803 pKa = 3.96EE804 pKa = 4.37EE805 pKa = 4.21EE806 pKa = 4.39KK807 pKa = 11.43YY808 pKa = 10.47KK809 pKa = 11.17GNYY812 pKa = 8.39SDD814 pKa = 6.28RR815 pKa = 11.84ILQNPYY821 pKa = 9.37YY822 pKa = 9.42INSISIEE829 pKa = 4.07EE830 pKa = 4.51LDD832 pKa = 3.61NLDD835 pKa = 3.86WEE837 pKa = 4.76FEE839 pKa = 4.19YY840 pKa = 11.26QEE842 pKa = 5.66DD843 pKa = 4.44IEE845 pKa = 6.84DD846 pKa = 3.93DD847 pKa = 4.04LEE849 pKa = 4.34YY850 pKa = 11.14QNFVYY855 pKa = 10.59QEE857 pKa = 4.53SNDD860 pKa = 3.18NWYY863 pKa = 10.81SDD865 pKa = 3.51QEE867 pKa = 3.8NWYY870 pKa = 10.7SDD872 pKa = 3.39EE873 pKa = 4.23QYY875 pKa = 11.15LGIYY879 pKa = 8.2MFIGEE884 pKa = 4.43TSGEE888 pKa = 4.01NNQDD892 pKa = 3.15NMEE895 pKa = 4.71GIIKK899 pKa = 9.6EE900 pKa = 4.18YY901 pKa = 11.14NKK903 pKa = 10.05TEE905 pKa = 3.85PEE907 pKa = 4.51KK908 pKa = 10.51INKK911 pKa = 9.56IIFTSEE917 pKa = 3.41KK918 pKa = 9.76FKK920 pKa = 11.16QIMEE924 pKa = 4.32NDD926 pKa = 3.25LNMTKK931 pKa = 10.81DD932 pKa = 4.12KK933 pKa = 10.83IFHH936 pKa = 5.84NNKK939 pKa = 9.34LKK941 pKa = 10.91KK942 pKa = 10.57LFGKK946 pKa = 10.42KK947 pKa = 9.5EE948 pKa = 3.43IEE950 pKa = 4.22YY951 pKa = 10.8YY952 pKa = 9.91IVTDD956 pKa = 3.51IEE958 pKa = 4.15HH959 pKa = 7.42PIDD962 pKa = 3.55VKK964 pKa = 11.01YY965 pKa = 10.86VQNQDD970 pKa = 3.55KK971 pKa = 10.62IINLPLYY978 pKa = 9.23NQEE981 pKa = 3.64IFEE984 pKa = 4.4NEE986 pKa = 3.66IQKK989 pKa = 10.13IPDD992 pKa = 3.21KK993 pKa = 10.79DD994 pKa = 3.51QNKK997 pKa = 8.99IRR999 pKa = 11.84NIHH1002 pKa = 5.86LAAVEE1007 pKa = 4.31IVVKK1011 pKa = 10.56AYY1013 pKa = 9.98FRR1015 pKa = 11.84EE1016 pKa = 5.3GIDD1019 pKa = 3.4TPFEE1023 pKa = 4.97IILCDD1028 pKa = 4.46DD1029 pKa = 5.28RR1030 pKa = 11.84ITYY1033 pKa = 8.19PQEE1036 pKa = 3.93GSLVEE1041 pKa = 4.04VLIGNLIYY1049 pKa = 10.74QKK1051 pKa = 11.18VKK1053 pKa = 7.8FTKK1056 pKa = 10.08IINYY1060 pKa = 9.62SISIEE1065 pKa = 4.22DD1066 pKa = 3.64KK1067 pKa = 11.11NLDD1070 pKa = 3.79KK1071 pKa = 11.31SLVMYY1076 pKa = 9.76WNLEE1080 pKa = 4.14GIKK1083 pKa = 9.47MIKK1086 pKa = 9.7DD1087 pKa = 3.32SKK1089 pKa = 10.55IFSIRR1094 pKa = 11.84LRR1096 pKa = 11.84NLYY1099 pKa = 10.04VLSNKK1104 pKa = 10.14HH1105 pKa = 4.53IVKK1108 pKa = 10.39NKK1110 pKa = 9.15KK1111 pKa = 9.47QYY1113 pKa = 10.13NGNIIIEE1120 pKa = 4.78PIFQDD1125 pKa = 4.23VIQNNNRR1132 pKa = 11.84NYY1134 pKa = 9.99IEE1136 pKa = 3.96YY1137 pKa = 10.02GKK1139 pKa = 9.59PGKK1142 pKa = 9.91FDD1144 pKa = 3.29RR1145 pKa = 11.84TKK1147 pKa = 10.35LKK1149 pKa = 10.55SYY1151 pKa = 9.65SRR1153 pKa = 11.84RR1154 pKa = 11.84FNEE1157 pKa = 4.02PLRR1160 pKa = 11.84LDD1162 pKa = 3.77DD1163 pKa = 3.44RR1164 pKa = 11.84TNIQRR1169 pKa = 11.84EE1170 pKa = 3.61KK1171 pKa = 11.16DD1172 pKa = 3.5QIEE1175 pKa = 4.33KK1176 pKa = 10.54ADD1178 pKa = 4.19HH1179 pKa = 6.08NLEE1182 pKa = 4.11LQKK1185 pKa = 10.77EE1186 pKa = 4.46LNNLNYY1192 pKa = 10.15YY1193 pKa = 8.6SQQGQSSNVLDD1204 pKa = 3.38IPKK1207 pKa = 9.83ILKK1210 pKa = 9.83IEE1212 pKa = 4.1NTKK1215 pKa = 10.74NNYY1218 pKa = 8.84KK1219 pKa = 9.84QFHH1222 pKa = 7.04IIGKK1226 pKa = 7.53ITEE1229 pKa = 3.91GRR1231 pKa = 11.84LNKK1234 pKa = 10.08FYY1236 pKa = 10.4PILIDD1241 pKa = 3.14TGAADD1246 pKa = 4.13SYY1248 pKa = 10.81ISSKK1252 pKa = 10.51ILEE1255 pKa = 4.37DD1256 pKa = 3.48EE1257 pKa = 4.24KK1258 pKa = 11.37LVSNKK1263 pKa = 9.63LSKK1266 pKa = 10.98VVTSYY1271 pKa = 11.32NADD1274 pKa = 3.79NEE1276 pKa = 3.99KK1277 pKa = 10.51HH1278 pKa = 6.49IYY1280 pKa = 9.71DD1281 pKa = 4.31RR1282 pKa = 11.84NTEE1285 pKa = 4.17VIIEE1289 pKa = 4.87LIDD1292 pKa = 3.85KK1293 pKa = 10.82NNEE1296 pKa = 3.58KK1297 pKa = 10.95YY1298 pKa = 10.49KK1299 pKa = 10.72INFIGLVDD1307 pKa = 3.72QLRR1310 pKa = 11.84LLEE1313 pKa = 4.41GGKK1316 pKa = 10.24AEE1318 pKa = 4.65ILLGMNILQNLKK1330 pKa = 9.74PYY1332 pKa = 10.45CITDD1336 pKa = 3.91DD1337 pKa = 3.75YY1338 pKa = 12.03LEE1340 pKa = 4.52INLGFRR1346 pKa = 11.84CIKK1349 pKa = 9.76INRR1352 pKa = 11.84IKK1354 pKa = 10.81KK1355 pKa = 9.89DD1356 pKa = 2.85IFEE1359 pKa = 4.2IRR1361 pKa = 11.84EE1362 pKa = 4.14DD1363 pKa = 3.71LQQMNVLNEE1372 pKa = 3.88

Molecular weight:
163.73 kDa
Isoelectric point according different methods:






Protein with the highest isoelectric point:
>sp|Q89703|POL_CSVMV Putative enzymatic polyprotein OS=Cassava vein mosaic virus OX=38062 GN=ORF 3 PE=3 SV=1
MM1 pKa = 8.18SLMNSTNPEE10 pKa = 4.01FIEE13 pKa = 4.7YY14 pKa = 10.51YY15 pKa = 7.48HH16 pKa = 6.43TSWKK20 pKa = 7.94PHH22 pKa = 6.38KK23 pKa = 10.16IEE25 pKa = 4.28LVDD28 pKa = 4.75NIYY31 pKa = 10.68HH32 pKa = 5.96SYY34 pKa = 10.64GYY36 pKa = 10.11YY37 pKa = 9.76VYY39 pKa = 9.56TRR41 pKa = 11.84SVIKK45 pKa = 10.44RR46 pKa = 11.84FNKK49 pKa = 9.97HH50 pKa = 6.22LIKK53 pKa = 8.64TTYY56 pKa = 10.36KK57 pKa = 10.5RR58 pKa = 11.84IFSHH62 pKa = 6.87PEE64 pKa = 3.41NIVLHH69 pKa = 5.94FRR71 pKa = 3.8

Molecular weight:
8.8 kDa
Isoelectric point according different methods:






Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

2541

54

1372

508.2

60.43

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

2.44 ± 0.479

1.102 ± 0.429

5.037 ± 0.53

10.232 ± 1.528

3.109 ± 0.782

3.463 ± 0.36

1.889 ± 0.582

11.177 ± 0.88

11.885 ± 0.921

8.501 ± 1.063

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.046 ± 0.316

8.225 ± 1.016

3.266 ± 0.309

4.723 ± 1.207

3.463 ± 0.428

4.919 ± 0.542

3.975 ± 0.496

3.266 ± 0.697

1.023 ± 0.101

6.257 ± 0.363

Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski