Fer-de-Lance paramyxovirus (strain ATCC VR-895) (FLDV) (Fer-de-Lance virus)

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Orthoparamyxovirinae; Ferlavirus; Reptilian ferlavirus

Average proteome isoelectric point is 6.34

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q6YIS1|Q6YIS1_FDLV8 Fusion glycoprotein F0 OS=Fer-de-Lance paramyxovirus (strain ATCC VR-895) OX=1283347 GN=F PE=3 SV=1
MM1 pKa = 7.93DD2 pKa = 5.49PKK4 pKa = 10.77SYY6 pKa = 11.08YY7 pKa = 10.54CNEE10 pKa = 4.36DD11 pKa = 3.18LRR13 pKa = 11.84SDD15 pKa = 3.79GGEE18 pKa = 3.92KK19 pKa = 10.59SPGGDD24 pKa = 3.17LYY26 pKa = 11.32KK27 pKa = 11.02GIILVSTVISLIIAIISLAFIIDD50 pKa = 3.52NKK52 pKa = 10.76INIQSLDD59 pKa = 3.73PLRR62 pKa = 11.84GLEE65 pKa = 4.11DD66 pKa = 3.63SYY68 pKa = 11.85LVPIKK73 pKa = 10.59DD74 pKa = 3.36KK75 pKa = 11.41SEE77 pKa = 4.72SISQDD82 pKa = 2.64IQEE85 pKa = 5.07GIFPRR90 pKa = 11.84LNLITAATTTTIPRR104 pKa = 11.84SIAIQTKK111 pKa = 10.09DD112 pKa = 3.61LSDD115 pKa = 5.41LIMNRR120 pKa = 11.84CYY122 pKa = 10.48PSVVNNDD129 pKa = 3.33TSCDD133 pKa = 3.57VLAGAIHH140 pKa = 6.76SNLFSQLDD148 pKa = 3.65PSTYY152 pKa = 6.92WTCSSGTPTMNQTVKK167 pKa = 10.92LLPDD171 pKa = 3.63NSQIPGSTYY180 pKa = 9.1STGCVRR186 pKa = 11.84IPTFSLGSMIYY197 pKa = 9.69SYY199 pKa = 10.73SHH201 pKa = 5.07NVIYY205 pKa = 9.98EE206 pKa = 3.91GCNDD210 pKa = 3.42HH211 pKa = 7.04SKK213 pKa = 10.93SSQYY217 pKa = 8.87WQLGYY222 pKa = 10.41ISTSKK227 pKa = 9.57TGEE230 pKa = 3.85PLQQVSRR237 pKa = 11.84TLTLNNGLNRR247 pKa = 11.84KK248 pKa = 8.96SCSTVAQGRR257 pKa = 11.84GAYY260 pKa = 9.35LLCTNVVEE268 pKa = 5.87DD269 pKa = 4.05EE270 pKa = 4.2RR271 pKa = 11.84TDD273 pKa = 3.48YY274 pKa = 10.32STEE277 pKa = 4.35GIQDD281 pKa = 3.51LTLDD285 pKa = 4.05YY286 pKa = 10.95IDD288 pKa = 3.94IFGAEE293 pKa = 3.34RR294 pKa = 11.84SYY296 pKa = 11.1RR297 pKa = 11.84YY298 pKa = 8.44TNNEE302 pKa = 3.16VDD304 pKa = 3.94LDD306 pKa = 3.81RR307 pKa = 11.84PYY309 pKa = 11.27AALYY313 pKa = 9.38PSVGSGTVYY322 pKa = 10.77NDD324 pKa = 3.84RR325 pKa = 11.84ILFLGYY331 pKa = 10.09GGLMTPYY338 pKa = 10.36GDD340 pKa = 4.0QAMCQAPEE348 pKa = 4.39CTSATQEE355 pKa = 4.28GCNSNQLIGYY365 pKa = 8.23FSGRR369 pKa = 11.84QIVNCIIEE377 pKa = 4.81IITVGTEE384 pKa = 3.54KK385 pKa = 10.65PIIRR389 pKa = 11.84VRR391 pKa = 11.84TIPNSQVWLGAEE403 pKa = 4.28GRR405 pKa = 11.84IQTLGGVLYY414 pKa = 10.43LYY416 pKa = 10.08IRR418 pKa = 11.84SSGWHH423 pKa = 6.36ALAQTGIILTLDD435 pKa = 4.84PIRR438 pKa = 11.84ISWIVNTGYY447 pKa = 10.51SRR449 pKa = 11.84PGNGPCSASSRR460 pKa = 11.84CPAQCITGVYY470 pKa = 9.63TDD472 pKa = 4.94IFPLSQNYY480 pKa = 9.96GYY482 pKa = 10.66LATVTLLSGVDD493 pKa = 3.17RR494 pKa = 11.84VNPVISYY501 pKa = 7.4GTSTGRR507 pKa = 11.84VADD510 pKa = 3.87SQLTSSSQVAAYY522 pKa = 7.11TTTTCFTFNQKK533 pKa = 10.0GYY535 pKa = 9.02CYY537 pKa = 10.0HH538 pKa = 7.93IIEE541 pKa = 5.32LSPATLGIFQPVLVVTEE558 pKa = 4.09IPKK561 pKa = 9.79ICSS564 pKa = 3.11

Molecular weight: 61.6 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q6YIS6|Q6YIS6_FDLV8 Nucleocapsid OS=Fer-de-Lance paramyxovirus (strain ATCC VR-895) OX=1283347 GN=NP PE=3 SV=1
MM1 pKa = 7.27IRR3 pKa = 11.84TRR5 pKa = 11.84IYY7 pKa = 10.39KK8 pKa = 8.35PTYY11 pKa = 6.94TTTTPPTCHH20 pKa = 6.15TPIKK24 pKa = 9.83MEE26 pKa = 4.15EE27 pKa = 4.0DD28 pKa = 3.7PRR30 pKa = 11.84EE31 pKa = 4.05KK32 pKa = 9.72MHH34 pKa = 6.32PQSMWRR40 pKa = 11.84LVRR43 pKa = 11.84LRR45 pKa = 11.84AQRR48 pKa = 11.84LLSYY52 pKa = 10.72SEE54 pKa = 4.16STDD57 pKa = 3.08LSTRR61 pKa = 11.84EE62 pKa = 3.85FLEE65 pKa = 4.51DD66 pKa = 3.24VSKK69 pKa = 11.25SVVVLFNRR77 pKa = 11.84DD78 pKa = 3.08GMSSISQWRR87 pKa = 11.84TEE89 pKa = 3.85DD90 pKa = 3.29CAARR94 pKa = 11.84RR95 pKa = 11.84LGNLSKK101 pKa = 10.44FAWDD105 pKa = 3.34AVTKK109 pKa = 10.83GRR111 pKa = 11.84MDD113 pKa = 3.86PCRR116 pKa = 11.84LAFKK120 pKa = 10.18MVTEE124 pKa = 5.03LGNDD128 pKa = 3.15VAIRR132 pKa = 11.84AEE134 pKa = 3.81ILTVVWLITGWSTIPRR150 pKa = 11.84TLHH153 pKa = 5.97KK154 pKa = 10.29DD155 pKa = 2.99LWSSAIYY162 pKa = 10.06RR163 pKa = 11.84RR164 pKa = 11.84LSLL167 pKa = 4.06

Molecular weight: 19.44 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

4935

167

2181

616.9

68.51

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.694 ± 0.775

1.743 ± 0.274

5.39 ± 0.18

5.897 ± 0.639

3.019 ± 0.344

6.403 ± 0.542

1.662 ± 0.33

8.186 ± 0.52

5.694 ± 0.483

9.463 ± 0.784

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.614 ± 0.314

4.721 ± 0.313

4.093 ± 0.547

3.708 ± 0.258

4.965 ± 0.488

8.936 ± 0.247

7.295 ± 0.613

6.444 ± 0.354

0.993 ± 0.147

3.08 ± 0.655
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski