Amino acid dipepetide frequency for Wenling crustacean virus 5

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
4.617AlaAla: 4.617 ± 1.736
0.989AlaCys: 0.989 ± 0.446
3.628AlaAsp: 3.628 ± 1.141
3.298AlaGlu: 3.298 ± 0.422
3.958AlaPhe: 3.958 ± 1.339
3.958AlaGly: 3.958 ± 0.819
2.309AlaHis: 2.309 ± 1.388
2.639AlaIle: 2.639 ± 0.025
4.947AlaLys: 4.947 ± 0.893
5.937AlaLeu: 5.937 ± 0.968
1.979AlaMet: 1.979 ± 0.67
2.968AlaAsn: 2.968 ± 0.817
2.639AlaPro: 2.639 ± 0.025
0.66AlaGln: 0.66 ± 0.397
1.649AlaArg: 1.649 ± 0.049
3.628AlaSer: 3.628 ± 0.1
4.617AlaThr: 4.617 ± 0.695
2.309AlaVal: 2.309 ± 0.868
0.33AlaTrp: 0.33 ± 0.198
2.639AlaTyr: 2.639 ± 0.025
0.0AlaXaa: 0.0 ± 0.0
Cys
0.66CysAla: 0.66 ± 0.124
0.66CysCys: 0.66 ± 0.124
2.639CysAsp: 2.639 ± 1.536
1.319CysGlu: 1.319 ± 0.248
1.319CysPhe: 1.319 ± 0.273
1.319CysGly: 1.319 ± 0.273
0.33CysHis: 0.33 ± 0.322
0.989CysIle: 0.989 ± 0.595
0.989CysLys: 0.989 ± 0.075
1.649CysLeu: 1.649 ± 0.049
0.33CysMet: 0.33 ± 0.197
0.989CysAsn: 0.989 ± 0.595
1.319CysPro: 1.319 ± 0.768
0.33CysGln: 0.33 ± 0.322
0.0CysArg: 0.0 ± 0.0
1.979CysSer: 1.979 ± 0.371
0.66CysThr: 0.66 ± 0.124
0.33CysVal: 0.33 ± 0.322
0.989CysTrp: 0.989 ± 0.446
0.989CysTyr: 0.989 ± 0.075
0.0CysXaa: 0.0 ± 0.0
Asp
4.288AspAla: 4.288 ± 1.537
1.649AspCys: 1.649 ± 0.57
5.277AspAsp: 5.277 ± 1.612
4.947AspGlu: 4.947 ± 1.709
4.288AspPhe: 4.288 ± 0.497
1.979AspGly: 1.979 ± 0.67
1.649AspHis: 1.649 ± 0.471
3.298AspIle: 3.298 ± 0.619
3.298AspLys: 3.298 ± 0.942
4.617AspLeu: 4.617 ± 0.346
1.319AspMet: 1.319 ± 0.793
3.298AspAsn: 3.298 ± 0.098
2.309AspPro: 2.309 ± 2.255
2.639AspGln: 2.639 ± 0.025
1.979AspArg: 1.979 ± 0.149
4.947AspSer: 4.947 ± 1.709
3.298AspThr: 3.298 ± 1.463
5.277AspVal: 5.277 ± 0.99
0.66AspTrp: 0.66 ± 0.644
1.979AspTyr: 1.979 ± 0.149
0.0AspXaa: 0.0 ± 0.0
Glu
4.288GluAla: 4.288 ± 1.017
0.66GluCys: 0.66 ± 0.124
2.968GluAsp: 2.968 ± 0.744
6.596GluGlu: 6.596 ± 1.885
1.649GluPhe: 1.649 ± 0.57
1.979GluGly: 1.979 ± 0.371
1.979GluHis: 1.979 ± 0.371
4.617GluIle: 4.617 ± 0.866
3.628GluLys: 3.628 ± 0.62
4.947GluLeu: 4.947 ± 0.668
1.649GluMet: 1.649 ± 0.992
1.649GluAsn: 1.649 ± 0.57
2.968GluPro: 2.968 ± 0.817
3.628GluGln: 3.628 ± 0.941
2.639GluArg: 2.639 ± 0.546
6.596GluSer: 6.596 ± 1.885
3.958GluThr: 3.958 ± 0.819
2.968GluVal: 2.968 ± 0.744
0.989GluTrp: 0.989 ± 0.075
4.617GluTyr: 4.617 ± 1.387
0.0GluXaa: 0.0 ± 0.0
Phe
2.968PheAla: 2.968 ± 0.224
0.66PheCys: 0.66 ± 0.124
2.968PheAsp: 2.968 ± 1.338
7.256PheGlu: 7.256 ± 1.241
1.649PhePhe: 1.649 ± 0.57
3.298PheGly: 3.298 ± 1.983
1.979PheHis: 1.979 ± 0.371
2.309PheIle: 2.309 ± 0.868
2.968PheLys: 2.968 ± 0.297
2.968PheLeu: 2.968 ± 0.224
1.319PheMet: 1.319 ± 0.248
2.639PheAsn: 2.639 ± 0.495
1.319PhePro: 1.319 ± 0.793
4.617PheGln: 4.617 ± 1.215
1.319PheArg: 1.319 ± 0.248
3.298PheSer: 3.298 ± 0.619
4.617PheThr: 4.617 ± 0.695
2.639PheVal: 2.639 ± 0.546
0.66PheTrp: 0.66 ± 0.124
0.66PheTyr: 0.66 ± 0.124
0.0PheXaa: 0.0 ± 0.0
Gly
2.639GlyAla: 2.639 ± 0.495
0.66GlyCys: 0.66 ± 0.397
1.649GlyAsp: 1.649 ± 0.049
2.639GlyGlu: 2.639 ± 0.495
2.309GlyPhe: 2.309 ± 0.347
1.649GlyGly: 1.649 ± 0.992
0.989GlyHis: 0.989 ± 0.446
3.958GlyIle: 3.958 ± 0.819
3.958GlyLys: 3.958 ± 1.86
3.958GlyLeu: 3.958 ± 1.339
0.33GlyMet: 0.33 ± 0.198
2.968GlyAsn: 2.968 ± 0.297
0.33GlyPro: 0.33 ± 0.198
1.979GlyGln: 1.979 ± 1.19
2.639GlyArg: 2.639 ± 0.025
5.937GlySer: 5.937 ± 0.447
2.968GlyThr: 2.968 ± 1.265
2.968GlyVal: 2.968 ± 0.817
1.319GlyTrp: 1.319 ± 0.273
2.309GlyTyr: 2.309 ± 0.868
0.0GlyXaa: 0.0 ± 0.0
His
0.989HisAla: 0.989 ± 0.075
0.989HisCys: 0.989 ± 0.075
0.989HisAsp: 0.989 ± 0.075
1.979HisGlu: 1.979 ± 0.149
1.649HisPhe: 1.649 ± 0.57
1.979HisGly: 1.979 ± 0.67
0.33HisHis: 0.33 ± 0.322
1.649HisIle: 1.649 ± 0.049
0.33HisLys: 0.33 ± 0.322
4.947HisLeu: 4.947 ± 0.893
0.66HisMet: 0.66 ± 0.124
1.319HisAsn: 1.319 ± 0.248
0.989HisPro: 0.989 ± 0.446
1.319HisGln: 1.319 ± 0.273
1.649HisArg: 1.649 ± 0.049
2.309HisSer: 2.309 ± 0.173
2.639HisThr: 2.639 ± 1.015
0.66HisVal: 0.66 ± 0.644
0.66HisTrp: 0.66 ± 0.124
1.979HisTyr: 1.979 ± 0.149
0.0HisXaa: 0.0 ± 0.0
Ile
4.288IleAla: 4.288 ± 0.497
0.0IleCys: 0.0 ± 0.0
6.926IleAsp: 6.926 ± 0.519
3.958IleGlu: 3.958 ± 0.819
1.979IlePhe: 1.979 ± 0.67
3.628IleGly: 3.628 ± 1.661
2.309IleHis: 2.309 ± 0.173
4.288IleIle: 4.288 ± 1.065
1.979IleLys: 1.979 ± 0.149
4.617IleLeu: 4.617 ± 1.387
1.319IleMet: 1.319 ± 0.273
2.968IleAsn: 2.968 ± 0.297
3.628IlePro: 3.628 ± 0.941
0.989IleGln: 0.989 ± 0.446
2.639IleArg: 2.639 ± 1.066
6.266IleSer: 6.266 ± 1.436
4.288IleThr: 4.288 ± 1.585
2.639IleVal: 2.639 ± 0.546
0.33IleTrp: 0.33 ± 0.198
2.639IleTyr: 2.639 ± 0.495
0.0IleXaa: 0.0 ± 0.0
Lys
3.298LysAla: 3.298 ± 1.463
0.66LysCys: 0.66 ± 0.397
4.288LysAsp: 4.288 ± 0.024
3.298LysGlu: 3.298 ± 0.422
2.639LysPhe: 2.639 ± 0.546
1.979LysGly: 1.979 ± 1.19
1.649LysHis: 1.649 ± 0.049
6.926LysIle: 6.926 ± 0.522
2.639LysLys: 2.639 ± 0.546
3.628LysLeu: 3.628 ± 0.1
0.66LysMet: 0.66 ± 0.644
1.649LysAsn: 1.649 ± 0.992
2.309LysPro: 2.309 ± 1.214
1.979LysGln: 1.979 ± 0.371
3.958LysArg: 3.958 ± 1.86
3.628LysSer: 3.628 ± 0.941
3.628LysThr: 3.628 ± 0.42
2.639LysVal: 2.639 ± 0.495
0.989LysTrp: 0.989 ± 0.595
1.979LysTyr: 1.979 ± 0.149
0.0LysXaa: 0.0 ± 0.0
Leu
5.937LeuAla: 5.937 ± 0.968
2.309LeuCys: 2.309 ± 1.214
6.926LeuAsp: 6.926 ± 1.563
2.639LeuGlu: 2.639 ± 0.495
5.937LeuPhe: 5.937 ± 0.593
6.266LeuGly: 6.266 ± 3.248
2.968LeuHis: 2.968 ± 0.224
4.288LeuIle: 4.288 ± 0.544
5.277LeuLys: 5.277 ± 0.571
7.916LeuLeu: 7.916 ± 3.199
1.649LeuMet: 1.649 ± 0.483
3.298LeuAsn: 3.298 ± 0.422
4.288LeuPro: 4.288 ± 1.585
3.958LeuGln: 3.958 ± 0.743
3.958LeuArg: 3.958 ± 0.298
7.916LeuSer: 7.916 ± 0.597
7.256LeuThr: 7.256 ± 1.241
4.288LeuVal: 4.288 ± 0.024
1.319LeuTrp: 1.319 ± 0.273
2.639LeuTyr: 2.639 ± 0.025
0.0LeuXaa: 0.0 ± 0.0
Met
1.979MetAla: 1.979 ± 1.19
0.33MetCys: 0.33 ± 0.322
0.33MetAsp: 0.33 ± 0.322
1.319MetGlu: 1.319 ± 0.273
2.639MetPhe: 2.639 ± 0.025
1.649MetGly: 1.649 ± 0.049
0.66MetHis: 0.66 ± 0.124
1.979MetIle: 1.979 ± 0.892
0.66MetLys: 0.66 ± 0.644
0.989MetLeu: 0.989 ± 0.446
0.0MetMet: 0.0 ± 0.0
1.979MetAsn: 1.979 ± 0.892
0.0MetPro: 0.0 ± 0.0
1.979MetGln: 1.979 ± 0.371
1.979MetArg: 1.979 ± 1.19
1.319MetSer: 1.319 ± 0.273
2.309MetThr: 2.309 ± 0.347
0.66MetVal: 0.66 ± 0.397
0.66MetTrp: 0.66 ± 0.397
0.0MetTyr: 0.0 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
2.639AsnAla: 2.639 ± 0.025
0.989AsnCys: 0.989 ± 0.595
1.979AsnAsp: 1.979 ± 0.149
0.989AsnGlu: 0.989 ± 0.075
3.628AsnPhe: 3.628 ± 0.1
3.628AsnGly: 3.628 ± 0.941
0.66AsnHis: 0.66 ± 0.124
2.309AsnIle: 2.309 ± 0.693
0.989AsnLys: 0.989 ± 0.595
3.628AsnLeu: 3.628 ± 0.1
2.309AsnMet: 2.309 ± 0.693
1.979AsnAsn: 1.979 ± 0.892
2.639AsnPro: 2.639 ± 0.025
0.989AsnGln: 0.989 ± 0.075
2.309AsnArg: 2.309 ± 0.347
5.607AsnSer: 5.607 ± 1.312
1.979AsnThr: 1.979 ± 0.149
2.968AsnVal: 2.968 ± 0.297
0.33AsnTrp: 0.33 ± 0.198
0.989AsnTyr: 0.989 ± 0.966
0.0AsnXaa: 0.0 ± 0.0
Pro
2.639ProAla: 2.639 ± 0.546
1.319ProCys: 1.319 ± 0.768
3.628ProAsp: 3.628 ± 1.461
1.649ProGlu: 1.649 ± 1.09
0.66ProPhe: 0.66 ± 0.124
0.989ProGly: 0.989 ± 0.446
0.989ProHis: 0.989 ± 0.075
2.968ProIle: 2.968 ± 1.858
2.639ProLys: 2.639 ± 0.495
6.596ProLeu: 6.596 ± 0.197
0.989ProMet: 0.989 ± 0.075
1.319ProAsn: 1.319 ± 0.248
1.319ProPro: 1.319 ± 0.768
1.649ProGln: 1.649 ± 1.09
0.66ProArg: 0.66 ± 0.124
3.958ProSer: 3.958 ± 1.263
2.309ProThr: 2.309 ± 0.173
2.968ProVal: 2.968 ± 1.858
1.319ProTrp: 1.319 ± 0.248
2.309ProTyr: 2.309 ± 0.173
0.0ProXaa: 0.0 ± 0.0
Gln
3.298GlnAla: 3.298 ± 0.942
0.989GlnCys: 0.989 ± 0.446
1.979GlnAsp: 1.979 ± 0.67
3.958GlnGlu: 3.958 ± 1.339
2.309GlnPhe: 2.309 ± 0.347
1.319GlnGly: 1.319 ± 0.248
0.33GlnHis: 0.33 ± 0.322
0.989GlnIle: 0.989 ± 0.595
2.309GlnLys: 2.309 ± 1.388
4.288GlnLeu: 4.288 ± 0.497
1.319GlnMet: 1.319 ± 0.248
3.298GlnAsn: 3.298 ± 0.422
1.319GlnPro: 1.319 ± 0.768
3.628GlnGln: 3.628 ± 0.42
2.968GlnArg: 2.968 ± 0.817
2.968GlnSer: 2.968 ± 1.338
2.309GlnThr: 2.309 ± 0.347
2.309GlnVal: 2.309 ± 0.173
0.66GlnTrp: 0.66 ± 0.124
0.989GlnTyr: 0.989 ± 0.075
0.0GlnXaa: 0.0 ± 0.0
Arg
1.979ArgAla: 1.979 ± 0.67
0.0ArgCys: 0.0 ± 0.0
1.319ArgAsp: 1.319 ± 0.793
2.309ArgGlu: 2.309 ± 0.868
2.309ArgPhe: 2.309 ± 0.868
1.649ArgGly: 1.649 ± 0.471
1.979ArgHis: 1.979 ± 1.412
2.639ArgIle: 2.639 ± 0.025
3.628ArgLys: 3.628 ± 0.1
4.288ArgLeu: 4.288 ± 1.017
0.989ArgMet: 0.989 ± 0.595
2.309ArgAsn: 2.309 ± 0.173
1.649ArgPro: 1.649 ± 0.57
3.298ArgGln: 3.298 ± 1.463
2.639ArgArg: 2.639 ± 0.546
2.639ArgSer: 2.639 ± 0.546
4.617ArgThr: 4.617 ± 1.736
2.968ArgVal: 2.968 ± 0.297
1.319ArgTrp: 1.319 ± 1.288
2.309ArgTyr: 2.309 ± 0.173
0.0ArgXaa: 0.0 ± 0.0
Ser
3.628SerAla: 3.628 ± 0.42
1.979SerCys: 1.979 ± 0.149
4.947SerAsp: 4.947 ± 1.188
6.266SerGlu: 6.266 ± 0.646
3.958SerPhe: 3.958 ± 0.298
3.628SerGly: 3.628 ± 0.941
1.649SerHis: 1.649 ± 0.471
4.617SerIle: 4.617 ± 0.175
4.947SerLys: 4.947 ± 0.148
9.894SerLeu: 9.894 ± 1.266
3.298SerMet: 3.298 ± 0.422
1.979SerAsn: 1.979 ± 0.149
3.628SerPro: 3.628 ± 0.941
3.298SerGln: 3.298 ± 0.422
3.958SerArg: 3.958 ± 0.743
6.596SerSer: 6.596 ± 3.319
6.266SerThr: 6.266 ± 2.477
4.288SerVal: 4.288 ± 1.065
0.33SerTrp: 0.33 ± 0.198
2.968SerTyr: 2.968 ± 2.378
0.0SerXaa: 0.0 ± 0.0
Thr
4.947ThrAla: 4.947 ± 0.893
1.979ThrCys: 1.979 ± 0.149
1.979ThrAsp: 1.979 ± 0.371
5.277ThrGlu: 5.277 ± 0.051
3.628ThrPhe: 3.628 ± 1.141
1.979ThrGly: 1.979 ± 0.67
2.309ThrHis: 2.309 ± 0.868
4.617ThrIle: 4.617 ± 1.215
3.958ThrLys: 3.958 ± 1.263
8.575ThrLeu: 8.575 ± 0.993
0.33ThrMet: 0.33 ± 0.322
2.639ThrAsn: 2.639 ± 0.546
4.947ThrPro: 4.947 ± 1.188
2.639ThrGln: 2.639 ± 0.025
4.947ThrArg: 4.947 ± 0.373
3.958ThrSer: 3.958 ± 0.743
3.958ThrThr: 3.958 ± 0.298
2.639ThrVal: 2.639 ± 0.025
0.33ThrTrp: 0.33 ± 0.322
1.979ThrTyr: 1.979 ± 0.371
0.0ThrXaa: 0.0 ± 0.0
Val
1.979ValAla: 1.979 ± 0.371
0.66ValCys: 0.66 ± 0.124
4.288ValAsp: 4.288 ± 0.544
2.968ValGlu: 2.968 ± 0.817
2.309ValPhe: 2.309 ± 1.214
3.958ValGly: 3.958 ± 1.263
2.639ValHis: 2.639 ± 1.015
4.288ValIle: 4.288 ± 1.065
1.979ValLys: 1.979 ± 0.149
3.628ValLeu: 3.628 ± 0.42
1.649ValMet: 1.649 ± 0.57
3.298ValAsn: 3.298 ± 0.619
3.628ValPro: 3.628 ± 0.1
1.319ValGln: 1.319 ± 0.273
1.649ValArg: 1.649 ± 0.471
3.958ValSer: 3.958 ± 0.222
2.309ValThr: 2.309 ± 0.693
2.968ValVal: 2.968 ± 1.858
0.989ValTrp: 0.989 ± 0.075
1.649ValTyr: 1.649 ± 0.992
0.0ValXaa: 0.0 ± 0.0
Trp
0.66TrpAla: 0.66 ± 0.124
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
0.66TrpGlu: 0.66 ± 0.124
0.989TrpPhe: 0.989 ± 0.595
0.66TrpGly: 0.66 ± 0.644
0.0TrpHis: 0.0 ± 0.0
0.66TrpIle: 0.66 ± 0.397
1.319TrpLys: 1.319 ± 0.273
0.66TrpLeu: 0.66 ± 0.397
0.66TrpMet: 0.66 ± 0.124
0.33TrpAsn: 0.33 ± 0.322
0.33TrpPro: 0.33 ± 0.322
0.66TrpGln: 0.66 ± 0.124
1.319TrpArg: 1.319 ± 0.248
1.979TrpSer: 1.979 ± 0.67
1.319TrpThr: 1.319 ± 0.768
0.989TrpVal: 0.989 ± 0.966
0.0TrpTrp: 0.0 ± 0.0
1.319TrpTyr: 1.319 ± 0.273
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.979TyrAla: 1.979 ± 0.149
2.309TyrCys: 2.309 ± 0.693
4.288TyrAsp: 4.288 ± 0.024
1.649TyrGlu: 1.649 ± 0.57
2.309TyrPhe: 2.309 ± 0.173
0.66TyrGly: 0.66 ± 0.124
2.309TyrHis: 2.309 ± 0.173
1.649TyrIle: 1.649 ± 0.049
1.979TyrLys: 1.979 ± 0.371
3.628TyrLeu: 3.628 ± 0.42
0.33TyrMet: 0.33 ± 0.322
0.66TyrAsn: 0.66 ± 0.644
1.319TyrPro: 1.319 ± 0.248
1.979TyrGln: 1.979 ± 1.19
1.979TyrArg: 1.979 ± 1.19
2.639TyrSer: 2.639 ± 0.495
2.309TyrThr: 2.309 ± 0.868
2.639TyrVal: 2.639 ± 2.056
0.33TyrTrp: 0.33 ± 0.322
1.649TyrTyr: 1.649 ± 0.049
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (3033 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski