Micromonospora echinofusca

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micromonosporales; Micromonosporaceae; Micromonospora

Average proteome isoelectric point is 6.63

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5931 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1C5GG15|A0A1C5GG15_9ACTN CDP-glycerol:poly(Glycerophosphate) glycerophosphotransferase OS=Micromonospora echinofusca OX=47858 GN=GA0070610_5091 PE=3 SV=1
MM1 pKa = 7.28ITTTYY6 pKa = 9.85QVQGMTCGHH15 pKa = 7.03CATAVSNEE23 pKa = 3.54VGAIQGVSDD32 pKa = 3.8VQVDD36 pKa = 3.87VAAGRR41 pKa = 11.84VTVTSEE47 pKa = 4.24GPLDD51 pKa = 3.76TDD53 pKa = 3.95TVRR56 pKa = 11.84SAVDD60 pKa = 2.97EE61 pKa = 4.56AGYY64 pKa = 11.01DD65 pKa = 3.52LVGAA69 pKa = 4.97

Molecular weight: 6.99 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1C5G2T3|A0A1C5G2T3_9ACTN Signal transduction histidine kinase OS=Micromonospora echinofusca OX=47858 GN=GA0070610_0152 PE=4 SV=1
MM1 pKa = 7.28GSVVKK6 pKa = 10.49KK7 pKa = 9.45RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.48RR11 pKa = 11.84MAKK14 pKa = 9.41KK15 pKa = 9.87KK16 pKa = 9.7HH17 pKa = 5.84RR18 pKa = 11.84KK19 pKa = 8.7LLRR22 pKa = 11.84KK23 pKa = 7.84TRR25 pKa = 11.84VQRR28 pKa = 11.84RR29 pKa = 11.84RR30 pKa = 11.84LGKK33 pKa = 10.04

Molecular weight: 4.12 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5931

0

5931

2063498

29

9944

347.9

37.11

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.404 ± 0.051

0.761 ± 0.009

6.121 ± 0.025

5.132 ± 0.027

2.596 ± 0.016

9.488 ± 0.03

2.172 ± 0.015

2.886 ± 0.023

1.555 ± 0.023

10.543 ± 0.041

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.569 ± 0.011

1.666 ± 0.017

6.474 ± 0.033

2.626 ± 0.018

8.706 ± 0.04

4.542 ± 0.023

5.98 ± 0.03

9.218 ± 0.031

1.581 ± 0.013

1.981 ± 0.015
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski