Dyella thiooxydans

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Rhodanobacteraceae; Dyella

Average proteome isoelectric point is 6.83

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3854 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A160N617|A0A160N617_9GAMM Aminomethyltransferase OS=Dyella thiooxydans OX=445710 GN=gcvT PE=3 SV=1
MM1 pKa = 7.61TDD3 pKa = 2.73STAPASRR10 pKa = 11.84KK11 pKa = 7.81WMCVVCGFIYY21 pKa = 10.64DD22 pKa = 3.74EE23 pKa = 4.37ALGVPEE29 pKa = 4.86EE30 pKa = 5.24DD31 pKa = 3.21IAPGTRR37 pKa = 11.84WEE39 pKa = 4.7DD40 pKa = 3.78VPDD43 pKa = 3.14TWTCPDD49 pKa = 3.84CGATKK54 pKa = 10.7DD55 pKa = 3.9DD56 pKa = 4.11FEE58 pKa = 4.95MIEE61 pKa = 3.83VDD63 pKa = 3.41

Molecular weight: 7.02 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A160N520|A0A160N520_9GAMM Uncharacterized protein OS=Dyella thiooxydans OX=445710 GN=ATSB10_35830 PE=4 SV=1
MM1 pKa = 7.6LSASLRR7 pKa = 11.84SHH9 pKa = 6.5LPVRR13 pKa = 11.84RR14 pKa = 11.84FTAHH18 pKa = 6.42PRR20 pKa = 11.84NPRR23 pKa = 11.84HH24 pKa = 6.03ALQRR28 pKa = 11.84MPRR31 pKa = 11.84TSRR34 pKa = 11.84PRR36 pKa = 11.84AAASRR41 pKa = 3.78

Molecular weight: 4.74 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3854

0

3854

1249098

37

3267

324.1

35.2

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.986 ± 0.055

0.826 ± 0.012

5.855 ± 0.027

5.021 ± 0.041

3.347 ± 0.022

8.638 ± 0.05

2.555 ± 0.02

3.986 ± 0.026

2.659 ± 0.034

11.001 ± 0.053

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.287 ± 0.02

2.326 ± 0.032

5.522 ± 0.035

3.7 ± 0.027

7.666 ± 0.052

5.177 ± 0.039

4.989 ± 0.041

7.518 ± 0.038

1.547 ± 0.017

2.395 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski