Corallococcus sp. CAG:1435

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus; environmental samples

Average proteome isoelectric point is 6.68

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1300 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|R5W5F6|R5W5F6_9DELT Lon protease OS=Corallococcus sp. CAG:1435 OX=1262867 GN=lon PE=2 SV=1
MM1 pKa = 7.63PAGNVTATANYY12 pKa = 9.74EE13 pKa = 4.25FIDD16 pKa = 3.6YY17 pKa = 8.44TVTVNGGKK25 pKa = 9.73AQVNDD30 pKa = 4.22GVASASVKK38 pKa = 10.13AHH40 pKa = 6.18YY41 pKa = 10.52GDD43 pKa = 3.95TVTITAEE50 pKa = 4.07VPVGKK55 pKa = 10.07EE56 pKa = 3.39FVMWSFNGLVPDD68 pKa = 5.49GLTLTNKK75 pKa = 9.79EE76 pKa = 4.28LTFTMPANAVTATAEE91 pKa = 3.96LRR93 pKa = 11.84DD94 pKa = 3.9LVKK97 pKa = 10.93SSVTVQGGVAQVGDD111 pKa = 4.28GEE113 pKa = 5.16LEE115 pKa = 4.21TSLEE119 pKa = 4.34AYY121 pKa = 10.5CGDD124 pKa = 3.75TVTLTAYY131 pKa = 10.33QYY133 pKa = 10.25TDD135 pKa = 2.8KK136 pKa = 11.17TFVKK140 pKa = 8.43WTIEE144 pKa = 4.5GIDD147 pKa = 3.75TEE149 pKa = 5.24GLDD152 pKa = 3.36LTQRR156 pKa = 11.84EE157 pKa = 4.69LTFTMPEE164 pKa = 3.79NDD166 pKa = 3.13VTATAEE172 pKa = 4.15FEE174 pKa = 4.31NVPTEE179 pKa = 3.96LTFEE183 pKa = 4.72GNTATSGEE191 pKa = 4.25LWYY194 pKa = 11.18VNYY197 pKa = 10.09DD198 pKa = 3.43SKK200 pKa = 11.59SFRR203 pKa = 11.84LPLGSGQDD211 pKa = 3.18SCTYY215 pKa = 10.05TIEE218 pKa = 4.31LSNSAFTFKK227 pKa = 10.99VYY229 pKa = 10.69GSDD232 pKa = 3.5GEE234 pKa = 4.49VYY236 pKa = 9.98IDD238 pKa = 3.73EE239 pKa = 4.58NGEE242 pKa = 4.23GVKK245 pKa = 10.58SITIDD250 pKa = 3.41RR251 pKa = 11.84EE252 pKa = 3.99DD253 pKa = 3.57NYY255 pKa = 10.72TIEE258 pKa = 4.45VINTGTAANCTLTVTQII275 pKa = 3.31

Molecular weight: 29.63 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|R5WHI6|R5WHI6_9DELT Cation-transporting ATPase P-type OS=Corallococcus sp. CAG:1435 OX=1262867 GN=BN495_00525 PE=4 SV=1
MM1 pKa = 7.36KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 9.67QPKK8 pKa = 9.11KK9 pKa = 7.52RR10 pKa = 11.84QRR12 pKa = 11.84SKK14 pKa = 9.17VHH16 pKa = 5.94GFRR19 pKa = 11.84ARR21 pKa = 11.84MKK23 pKa = 7.97TTGGRR28 pKa = 11.84RR29 pKa = 11.84TLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84NKK37 pKa = 9.66GRR39 pKa = 11.84HH40 pKa = 5.02SLSAA44 pKa = 3.67

Molecular weight: 5.25 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1300

0

1300

407049

34

2964

313.1

34.91

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.63 ± 0.07

2.005 ± 0.036

5.587 ± 0.052

5.967 ± 0.066

4.763 ± 0.058

6.681 ± 0.067

1.636 ± 0.037

5.935 ± 0.068

6.908 ± 0.074

9.121 ± 0.084

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.376 ± 0.037

4.909 ± 0.047

3.028 ± 0.033

3.854 ± 0.053

4.074 ± 0.068

6.062 ± 0.058

6.062 ± 0.1

8.654 ± 0.067

0.789 ± 0.024

3.952 ± 0.055
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski