Lactobacillus senioris DSM 24302 = JCM 17472

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lentilactobacillus; Lentilactobacillus senioris

Average proteome isoelectric point is 6.37

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1539 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0R2CZI9|A0A0R2CZI9_9LACO Bacteriophage integrase OS=Lactobacillus senioris DSM 24302 = JCM 17472 OX=1423802 GN=FC56_GL000311 PE=4 SV=1
MM1 pKa = 7.0ITAQVIYY8 pKa = 9.07ATITGNNEE16 pKa = 4.06DD17 pKa = 3.59IADD20 pKa = 4.45IITEE24 pKa = 4.05RR25 pKa = 11.84FEE27 pKa = 5.23DD28 pKa = 3.4RR29 pKa = 11.84GIDD32 pKa = 3.64VNQTEE37 pKa = 4.62ISQADD42 pKa = 3.06ASVFLEE48 pKa = 3.81CDD50 pKa = 2.81ICVVCPYY57 pKa = 10.11TYY59 pKa = 10.79DD60 pKa = 3.34EE61 pKa = 4.73GALPEE66 pKa = 4.65EE67 pKa = 4.81GLDD70 pKa = 4.72FYY72 pKa = 11.87DD73 pKa = 6.1DD74 pKa = 3.95LQEE77 pKa = 4.72LNLSGKK83 pKa = 10.27LYY85 pKa = 10.77GVAGSGDD92 pKa = 3.35TYY94 pKa = 11.32YY95 pKa = 11.11EE96 pKa = 3.83EE97 pKa = 4.52FFNVAVDD104 pKa = 3.49KK105 pKa = 11.18FEE107 pKa = 4.71QAFQKK112 pKa = 10.91AGATKK117 pKa = 9.02ATEE120 pKa = 4.07SVKK123 pKa = 10.66INLEE127 pKa = 3.87PDD129 pKa = 3.24QVDD132 pKa = 3.57IEE134 pKa = 4.37ALDD137 pKa = 3.98EE138 pKa = 4.32FTDD141 pKa = 4.12DD142 pKa = 6.35LILAAQKK149 pKa = 10.32QATEE153 pKa = 3.9

Molecular weight: 16.93 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0R2CRW1|A0A0R2CRW1_9LACO Phosphomethylpyrimidine kinase OS=Lactobacillus senioris DSM 24302 = JCM 17472 OX=1423802 GN=FC56_GL001466 PE=3 SV=1
MM1 pKa = 7.36KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 9.69QPKK8 pKa = 8.19KK9 pKa = 7.37RR10 pKa = 11.84HH11 pKa = 5.5RR12 pKa = 11.84ARR14 pKa = 11.84VHH16 pKa = 5.84GFRR19 pKa = 11.84KK20 pKa = 10.03RR21 pKa = 11.84MSTSNGRR28 pKa = 11.84KK29 pKa = 8.01VLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84QKK37 pKa = 10.39GRR39 pKa = 11.84KK40 pKa = 8.52VLSAA44 pKa = 4.05

Molecular weight: 5.32 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1539

0

1539

461827

44

1687

300.1

33.43

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.988 ± 0.059

0.359 ± 0.011

5.941 ± 0.059

5.636 ± 0.071

4.13 ± 0.046

6.671 ± 0.061

1.937 ± 0.029

7.271 ± 0.052

6.241 ± 0.063

9.582 ± 0.072

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.695 ± 0.029

5.258 ± 0.047

3.626 ± 0.032

4.822 ± 0.056

3.853 ± 0.049

5.935 ± 0.058

6.268 ± 0.045

7.28 ± 0.047

1.026 ± 0.026

3.481 ± 0.042
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski