Paracoccus yeei

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus

Average proteome isoelectric point is 6.56

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4275 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1V0GPW0|A0A1V0GPW0_9RHOB 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Paracoccus yeei OX=147645 GN=fabF PE=3 SV=1
MM1 pKa = 7.28TPEE4 pKa = 4.16NLQEE8 pKa = 4.43GDD10 pKa = 3.85PLIAPSTTEE19 pKa = 3.56HH20 pKa = 7.04PLYY23 pKa = 10.84DD24 pKa = 4.08SVVEE28 pKa = 4.21ACRR31 pKa = 11.84TVYY34 pKa = 10.74DD35 pKa = 3.74PEE37 pKa = 5.01IPVNIFDD44 pKa = 5.17LGLIYY49 pKa = 10.31TIAIDD54 pKa = 3.18QANAVRR60 pKa = 11.84IVMTLTAPGCPVAGEE75 pKa = 4.15MPGWVADD82 pKa = 3.91AVGAIPGVGQVDD94 pKa = 3.56VEE96 pKa = 4.62MTFQPQWGMDD106 pKa = 3.61MMSEE110 pKa = 4.19EE111 pKa = 4.48ARR113 pKa = 11.84LEE115 pKa = 4.05LGFII119 pKa = 4.34

Molecular weight: 12.85 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1V0GTV4|A0A1V0GTV4_9RHOB Choline phosphatase OS=Paracoccus yeei OX=147645 GN=cls PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.01RR4 pKa = 11.84TFQPSNLVRR13 pKa = 11.84ARR15 pKa = 11.84RR16 pKa = 11.84HH17 pKa = 4.37GFRR20 pKa = 11.84ARR22 pKa = 11.84MATKK26 pKa = 10.12GGRR29 pKa = 11.84RR30 pKa = 11.84VLNARR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 9.53GRR40 pKa = 11.84KK41 pKa = 8.73VLSAA45 pKa = 4.05

Molecular weight: 5.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4275

0

4275

1349426

30

2803

315.7

34.14

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.452 ± 0.061

0.856 ± 0.012

5.935 ± 0.03

5.42 ± 0.032

3.4 ± 0.022

8.976 ± 0.035

2.1 ± 0.02

4.875 ± 0.028

2.52 ± 0.032

10.467 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.637 ± 0.02

2.238 ± 0.019

5.645 ± 0.029

3.305 ± 0.022

7.829 ± 0.046

4.722 ± 0.022

5.013 ± 0.023

7.116 ± 0.033

1.483 ± 0.016

2.01 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski