Leucobacter triazinivorans

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Microbacteriaceae; Leucobacter

Average proteome isoelectric point is 6.08

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2978 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P6KH53|A0A4P6KH53_9MICO Glycosyltransferase OS=Leucobacter triazinivorans OX=1784719 GN=EVS81_11660 PE=4 SV=1
MM1 pKa = 7.82KK2 pKa = 10.54SRR4 pKa = 11.84ILGAAALTAAAALVLSGCAGGEE26 pKa = 4.17SGEE29 pKa = 4.22GAPIKK34 pKa = 10.4LGSVNTISGPATFPEE49 pKa = 4.41ASEE52 pKa = 3.93AAQAVFDD59 pKa = 4.28QVNADD64 pKa = 3.34GGINGRR70 pKa = 11.84MIEE73 pKa = 4.22YY74 pKa = 10.42KK75 pKa = 9.44ITDD78 pKa = 4.06DD79 pKa = 4.31KK80 pKa = 11.76ADD82 pKa = 4.12PATATASARR91 pKa = 11.84EE92 pKa = 4.1LVGSDD97 pKa = 3.18EE98 pKa = 4.39VVALVGSASLLDD110 pKa = 3.9CEE112 pKa = 5.39INAKK116 pKa = 10.38YY117 pKa = 10.35YY118 pKa = 8.14EE119 pKa = 4.16QEE121 pKa = 4.1GVRR124 pKa = 11.84SIQGIGVDD132 pKa = 4.16PGCFSSPNIAPANIGPFNDD151 pKa = 3.42TTLTMLYY158 pKa = 10.36GSEE161 pKa = 4.01EE162 pKa = 4.14LGLEE166 pKa = 4.08NLCVLTSVIGSTGPAYY182 pKa = 9.98QAAVDD187 pKa = 3.71RR188 pKa = 11.84WTEE191 pKa = 3.75ITGKK195 pKa = 10.34EE196 pKa = 3.96PTFVDD201 pKa = 3.28DD202 pKa = 3.62TVPYY206 pKa = 10.46GGADD210 pKa = 3.35YY211 pKa = 10.38TPYY214 pKa = 10.05IVKK217 pKa = 10.19ARR219 pKa = 11.84EE220 pKa = 4.0AGCDD224 pKa = 3.66GIVANSVEE232 pKa = 4.14PDD234 pKa = 3.56AIGLIKK240 pKa = 10.4AANQQGWDD248 pKa = 3.64DD249 pKa = 3.75VTFLLLTSVYY259 pKa = 10.34SEE261 pKa = 4.34SFAAAVDD268 pKa = 3.68NSAAGVYY275 pKa = 9.86VPAEE279 pKa = 4.23FYY281 pKa = 10.66PFTEE285 pKa = 4.92DD286 pKa = 4.06SDD288 pKa = 5.06VNADD292 pKa = 2.96WKK294 pKa = 11.46ALMEE298 pKa = 4.75EE299 pKa = 4.05NDD301 pKa = 3.14ITLTSFSQGGYY312 pKa = 9.52LAATFLVEE320 pKa = 4.01VLEE323 pKa = 4.64SIEE326 pKa = 4.12GDD328 pKa = 3.06ITRR331 pKa = 11.84DD332 pKa = 3.35SVNQALSDD340 pKa = 3.77MDD342 pKa = 5.33PIANPMIAYY351 pKa = 8.0EE352 pKa = 4.02YY353 pKa = 10.62QFDD356 pKa = 4.34RR357 pKa = 11.84IAAQDD362 pKa = 3.95YY363 pKa = 10.7QPGGWPVTLQSGTNAWEE380 pKa = 3.84QAADD384 pKa = 3.79DD385 pKa = 4.09WLMIPASS392 pKa = 3.61

Molecular weight: 41.18 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P6KEX9|A0A4P6KEX9_9MICO MFS transporter OS=Leucobacter triazinivorans OX=1784719 GN=EVS81_06365 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84AKK15 pKa = 9.5VHH17 pKa = 5.46GFRR20 pKa = 11.84ARR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84AIVAARR35 pKa = 11.84RR36 pKa = 11.84GKK38 pKa = 10.45GRR40 pKa = 11.84SKK42 pKa = 10.13LTAA45 pKa = 4.04

Molecular weight: 5.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2978

0

2978

1009833

32

3155

339.1

36.32

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.669 ± 0.068

0.559 ± 0.01

5.855 ± 0.04

6.37 ± 0.048

3.09 ± 0.025

9.135 ± 0.05

2.023 ± 0.022

4.563 ± 0.035

1.79 ± 0.034

10.21 ± 0.057

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.803 ± 0.022

1.855 ± 0.02

5.437 ± 0.034

2.928 ± 0.027

7.749 ± 0.058

5.656 ± 0.028

5.553 ± 0.041

8.446 ± 0.042

1.417 ± 0.02

1.891 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski