Amino acid dipepetide frequency for Latino mammarenavirus (isolate Rat/Bolivia/MARU 1924/1965) (LATV)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
2.059AlaAla: 2.059 ± 0.69
1.176AlaCys: 1.176 ± 0.746
1.176AlaAsp: 1.176 ± 0.297
2.059AlaGlu: 2.059 ± 0.803
1.471AlaPhe: 1.471 ± 0.17
2.353AlaGly: 2.353 ± 0.368
0.588AlaHis: 0.588 ± 0.369
2.353AlaIle: 2.353 ± 0.758
3.529AlaLys: 3.529 ± 0.666
6.176AlaLeu: 6.176 ± 0.747
0.882AlaMet: 0.882 ± 0.464
1.471AlaAsn: 1.471 ± 0.583
1.765AlaPro: 1.765 ± 2.069
0.588AlaGln: 0.588 ± 0.296
2.353AlaArg: 2.353 ± 0.335
0.882AlaSer: 0.882 ± 0.309
1.471AlaThr: 1.471 ± 0.607
0.882AlaVal: 0.882 ± 0.893
0.294AlaTrp: 0.294 ± 0.362
0.588AlaTyr: 0.588 ± 0.321
0.0AlaXaa: 0.0 ± 0.0
Cys
1.176CysAla: 1.176 ± 0.394
0.294CysCys: 0.294 ± 0.77
0.882CysAsp: 0.882 ± 0.294
2.059CysGlu: 2.059 ± 1.051
1.765CysPhe: 1.765 ± 0.615
1.176CysGly: 1.176 ± 0.873
0.294CysHis: 0.294 ± 0.161
0.588CysIle: 0.588 ± 0.852
1.176CysLys: 1.176 ± 0.873
2.941CysLeu: 2.941 ± 0.862
0.588CysMet: 0.588 ± 0.296
2.353CysAsn: 2.353 ± 1.477
0.882CysPro: 0.882 ± 0.294
2.647CysGln: 2.647 ± 0.524
0.588CysArg: 0.588 ± 0.321
2.647CysSer: 2.647 ± 1.357
0.882CysThr: 0.882 ± 0.309
2.941CysVal: 2.941 ± 0.752
0.588CysTrp: 0.588 ± 1.079
0.882CysTyr: 0.882 ± 0.482
0.0CysXaa: 0.0 ± 0.0
Asp
1.471AspAla: 1.471 ± 0.17
0.882AspCys: 0.882 ± 0.464
3.235AspAsp: 3.235 ± 1.191
3.235AspGlu: 3.235 ± 1.191
2.647AspPhe: 2.647 ± 1.109
3.235AspGly: 3.235 ± 0.567
1.765AspHis: 1.765 ± 1.259
4.118AspIle: 4.118 ± 1.742
3.235AspLys: 3.235 ± 0.813
9.118AspLeu: 9.118 ± 2.028
2.353AspMet: 2.353 ± 0.335
1.176AspAsn: 1.176 ± 0.906
1.765AspPro: 1.765 ± 0.656
2.353AspGln: 2.353 ± 0.782
2.353AspArg: 2.353 ± 0.955
2.941AspSer: 2.941 ± 0.682
1.176AspThr: 1.176 ± 0.311
2.941AspVal: 2.941 ± 1.033
0.588AspTrp: 0.588 ± 0.321
1.471AspTyr: 1.471 ± 0.376
0.0AspXaa: 0.0 ± 0.0
Glu
2.647GluAla: 2.647 ± 0.645
0.882GluCys: 0.882 ± 0.667
3.235GluAsp: 3.235 ± 1.768
5.0GluGlu: 5.0 ± 1.802
2.647GluPhe: 2.647 ± 0.321
4.118GluGly: 4.118 ± 0.764
1.765GluHis: 1.765 ± 0.496
2.353GluIle: 2.353 ± 0.592
5.0GluLys: 5.0 ± 1.485
8.235GluLeu: 8.235 ± 2.641
0.882GluMet: 0.882 ± 0.305
3.235GluAsn: 3.235 ± 0.622
1.765GluPro: 1.765 ± 0.618
2.941GluGln: 2.941 ± 0.447
0.882GluArg: 0.882 ± 0.294
5.882GluSer: 5.882 ± 1.752
3.824GluThr: 3.824 ± 0.311
3.529GluVal: 3.529 ± 0.915
0.588GluTrp: 0.588 ± 0.321
2.647GluTyr: 2.647 ± 0.882
0.0GluXaa: 0.0 ± 0.0
Phe
1.176PheAla: 1.176 ± 0.297
0.882PheCys: 0.882 ± 0.294
3.235PheAsp: 3.235 ± 0.865
4.412PheGlu: 4.412 ± 1.757
2.647PhePhe: 2.647 ± 0.321
2.941PheGly: 2.941 ± 0.339
1.176PheHis: 1.176 ± 0.297
3.529PheIle: 3.529 ± 0.54
4.118PheLys: 4.118 ± 0.44
5.0PheLeu: 5.0 ± 1.714
1.176PheMet: 1.176 ± 0.297
2.353PheAsn: 2.353 ± 0.955
0.588PhePro: 0.588 ± 0.369
2.647PheGln: 2.647 ± 1.404
1.765PheArg: 1.765 ± 0.481
3.235PheSer: 3.235 ± 1.421
3.529PheThr: 3.529 ± 0.625
3.529PheVal: 3.529 ± 1.579
0.882PheTrp: 0.882 ± 0.85
1.176PheTyr: 1.176 ± 0.297
0.0PheXaa: 0.0 ± 0.0
Gly
1.471GlyAla: 1.471 ± 1.077
0.882GlyCys: 0.882 ± 0.294
2.647GlyAsp: 2.647 ± 0.905
3.824GlyGlu: 3.824 ± 0.848
4.412GlyPhe: 4.412 ± 0.585
2.059GlyGly: 2.059 ± 0.834
1.176GlyHis: 1.176 ± 0.311
3.529GlyIle: 3.529 ± 1.072
3.235GlyLys: 3.235 ± 1.519
6.176GlyLeu: 6.176 ± 1.374
0.882GlyMet: 0.882 ± 0.294
3.824GlyAsn: 3.824 ± 1.243
2.353GlyPro: 2.353 ± 0.735
2.059GlyGln: 2.059 ± 0.774
3.824GlyArg: 3.824 ± 1.641
4.412GlySer: 4.412 ± 1.758
1.471GlyThr: 1.471 ± 0.804
3.824GlyVal: 3.824 ± 0.904
0.294GlyTrp: 0.294 ± 0.362
1.471GlyTyr: 1.471 ± 0.757
0.0GlyXaa: 0.0 ± 0.0
His
0.588HisAla: 0.588 ± 0.321
0.882HisCys: 0.882 ± 0.893
1.176HisAsp: 1.176 ± 0.311
1.176HisGlu: 1.176 ± 0.739
2.059HisPhe: 2.059 ± 0.803
0.882HisGly: 0.882 ± 0.309
1.471HisHis: 1.471 ± 1.217
1.471HisIle: 1.471 ± 0.648
0.882HisLys: 0.882 ± 0.482
3.235HisLeu: 3.235 ± 1.812
0.882HisMet: 0.882 ± 0.482
1.765HisAsn: 1.765 ± 0.113
1.765HisPro: 1.765 ± 0.113
0.882HisGln: 0.882 ± 0.294
0.882HisArg: 0.882 ± 0.85
2.059HisSer: 2.059 ± 0.635
0.294HisThr: 0.294 ± 0.488
1.176HisVal: 1.176 ± 0.643
0.0HisTrp: 0.0 ± 0.0
0.882HisTyr: 0.882 ± 1.487
0.0HisXaa: 0.0 ± 0.0
Ile
2.941IleAla: 2.941 ± 0.339
2.059IleCys: 2.059 ± 1.051
1.765IleAsp: 1.765 ± 0.618
5.0IleGlu: 5.0 ± 1.002
1.765IlePhe: 1.765 ± 0.618
3.529IleGly: 3.529 ± 1.502
2.059IleHis: 2.059 ± 0.485
2.059IleIle: 2.059 ± 0.485
5.294IleLys: 5.294 ± 0.603
5.882IleLeu: 5.882 ± 1.971
1.765IleMet: 1.765 ± 0.964
4.706IleAsn: 4.706 ± 0.756
1.765IlePro: 1.765 ± 1.024
2.647IleGln: 2.647 ± 0.845
1.471IleArg: 1.471 ± 0.804
4.412IleSer: 4.412 ± 0.857
4.412IleThr: 4.412 ± 0.748
4.706IleVal: 4.706 ± 1.909
0.588IleTrp: 0.588 ± 0.622
1.176IleTyr: 1.176 ± 0.394
0.0IleXaa: 0.0 ± 0.0
Lys
1.471LysAla: 1.471 ± 0.88
2.941LysCys: 2.941 ± 1.999
3.529LysAsp: 3.529 ± 0.914
4.118LysGlu: 4.118 ± 1.42
5.294LysPhe: 5.294 ± 2.533
4.412LysGly: 4.412 ± 1.054
1.471LysHis: 1.471 ± 0.376
2.353LysIle: 2.353 ± 0.788
2.059LysLys: 2.059 ± 0.69
11.765LysLeu: 11.765 ± 3.081
1.765LysMet: 1.765 ± 0.113
4.706LysAsn: 4.706 ± 1.517
3.235LysPro: 3.235 ± 2.361
1.765LysGln: 1.765 ± 0.6
4.706LysArg: 4.706 ± 0.794
6.765LysSer: 6.765 ± 2.103
2.059LysThr: 2.059 ± 1.125
2.941LysVal: 2.941 ± 1.033
0.588LysTrp: 0.588 ± 0.369
2.353LysTyr: 2.353 ± 0.335
0.0LysXaa: 0.0 ± 0.0
Leu
4.118LeuAla: 4.118 ± 0.419
3.529LeuCys: 3.529 ± 0.499
6.471LeuAsp: 6.471 ± 2.201
6.471LeuGlu: 6.471 ± 0.605
4.412LeuPhe: 4.412 ± 1.151
5.882LeuGly: 5.882 ± 1.051
2.059LeuHis: 2.059 ± 1.125
9.118LeuIle: 9.118 ± 1.704
10.0LeuLys: 10.0 ± 2.891
13.235LeuLeu: 13.235 ± 0.829
3.824LeuMet: 3.824 ± 0.783
6.765LeuAsn: 6.765 ± 1.316
2.941LeuPro: 2.941 ± 1.483
4.118LeuGln: 4.118 ± 0.947
5.882LeuArg: 5.882 ± 0.818
13.529LeuSer: 13.529 ± 2.55
7.647LeuThr: 7.647 ± 2.058
10.0LeuVal: 10.0 ± 1.205
1.176LeuTrp: 1.176 ± 0.297
3.235LeuTyr: 3.235 ± 0.792
0.0LeuXaa: 0.0 ± 0.0
Met
0.882MetAla: 0.882 ± 0.294
1.176MetCys: 1.176 ± 0.297
1.176MetAsp: 1.176 ± 0.591
0.588MetGlu: 0.588 ± 0.321
0.588MetPhe: 0.588 ± 0.296
0.882MetGly: 0.882 ± 0.968
0.588MetHis: 0.588 ± 0.369
2.353MetIle: 2.353 ± 0.782
1.765MetLys: 1.765 ± 0.113
1.471MetLeu: 1.471 ± 1.399
0.294MetMet: 0.294 ± 0.278
1.471MetAsn: 1.471 ± 0.607
0.0MetPro: 0.0 ± 0.0
0.588MetGln: 0.588 ± 0.369
1.471MetArg: 1.471 ± 1.077
5.882MetSer: 5.882 ± 0.527
2.059MetThr: 2.059 ± 0.635
0.882MetVal: 0.882 ± 0.464
0.588MetTrp: 0.588 ± 0.321
0.0MetTyr: 0.0 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
0.882AsnAla: 0.882 ± 0.464
2.059AsnCys: 2.059 ± 1.836
2.353AsnAsp: 2.353 ± 1.201
3.235AsnGlu: 3.235 ± 0.656
2.941AsnPhe: 2.941 ± 0.682
3.235AsnGly: 3.235 ± 1.369
1.471AsnHis: 1.471 ± 1.217
3.235AsnIle: 3.235 ± 1.991
3.235AsnLys: 3.235 ± 0.421
7.647AsnLeu: 7.647 ± 0.538
2.647AsnMet: 2.647 ± 0.609
2.059AsnAsn: 2.059 ± 0.382
2.647AsnPro: 2.647 ± 0.905
2.941AsnGln: 2.941 ± 0.754
3.235AsnArg: 3.235 ± 0.841
4.118AsnSer: 4.118 ± 0.419
3.824AsnThr: 3.824 ± 2.176
3.529AsnVal: 3.529 ± 0.54
0.588AsnTrp: 0.588 ± 0.321
2.647AsnTyr: 2.647 ± 0.845
0.0AsnXaa: 0.0 ± 0.0
Pro
0.588ProAla: 0.588 ± 0.296
1.176ProCys: 1.176 ± 0.394
2.059ProAsp: 2.059 ± 0.69
0.588ProGlu: 0.588 ± 0.369
0.588ProPhe: 0.588 ± 0.321
1.765ProGly: 1.765 ± 1.509
1.176ProHis: 1.176 ± 0.746
2.353ProIle: 2.353 ± 0.782
2.941ProLys: 2.941 ± 0.556
4.412ProLeu: 4.412 ± 0.739
0.0ProMet: 0.0 ± 0.0
1.765ProAsn: 1.765 ± 0.949
0.882ProPro: 0.882 ± 0.746
2.647ProGln: 2.647 ± 1.715
1.471ProArg: 1.471 ± 0.834
2.941ProSer: 2.941 ± 0.862
0.882ProThr: 0.882 ± 1.81
2.941ProVal: 2.941 ± 0.339
0.0ProTrp: 0.0 ± 0.0
1.471ProTyr: 1.471 ± 0.607
0.0ProXaa: 0.0 ± 0.0
Gln
2.647GlnAla: 2.647 ± 0.474
0.882GlnCys: 0.882 ± 0.294
2.059GlnAsp: 2.059 ± 0.631
2.353GlnGlu: 2.353 ± 0.788
1.765GlnPhe: 1.765 ± 0.113
2.647GlnGly: 2.647 ± 1.552
0.294GlnHis: 0.294 ± 0.488
3.529GlnIle: 3.529 ± 1.312
2.353GlnLys: 2.353 ± 0.335
3.824GlnLeu: 3.824 ± 1.222
1.471GlnMet: 1.471 ± 0.607
2.647GlnAsn: 2.647 ± 1.662
1.471GlnPro: 1.471 ± 0.834
0.882GlnGln: 0.882 ± 0.482
1.471GlnArg: 1.471 ± 0.517
4.412GlnSer: 4.412 ± 2.44
0.882GlnThr: 0.882 ± 0.482
3.235GlnVal: 3.235 ± 0.624
0.882GlnTrp: 0.882 ± 0.85
0.294GlnTyr: 0.294 ± 0.161
0.0GlnXaa: 0.0 ± 0.0
Arg
1.471ArgAla: 1.471 ± 0.583
0.882ArgCys: 0.882 ± 0.482
1.765ArgAsp: 1.765 ± 0.887
2.353ArgGlu: 2.353 ± 0.759
3.529ArgPhe: 3.529 ± 0.605
1.471ArgGly: 1.471 ± 0.612
1.176ArgHis: 1.176 ± 0.906
1.765ArgIle: 1.765 ± 0.656
2.941ArgLys: 2.941 ± 0.994
6.176ArgLeu: 6.176 ± 0.922
0.588ArgMet: 0.588 ± 0.3
3.529ArgAsn: 3.529 ± 1.001
1.176ArgPro: 1.176 ± 0.394
2.353ArgGln: 2.353 ± 0.621
2.941ArgArg: 2.941 ± 0.682
2.647ArgSer: 2.647 ± 1.552
2.647ArgThr: 2.647 ± 0.658
2.059ArgVal: 2.059 ± 1.258
1.471ArgTrp: 1.471 ± 0.17
1.765ArgTyr: 1.765 ± 0.782
0.0ArgXaa: 0.0 ± 0.0
Ser
3.824SerAla: 3.824 ± 1.355
2.941SerCys: 2.941 ± 0.855
5.882SerAsp: 5.882 ± 0.857
6.176SerGlu: 6.176 ± 0.66
4.706SerPhe: 4.706 ± 0.408
4.706SerGly: 4.706 ± 1.039
2.059SerHis: 2.059 ± 0.382
3.529SerIle: 3.529 ± 1.001
7.353SerLys: 7.353 ± 0.883
13.529SerLeu: 13.529 ± 1.243
1.765SerMet: 1.765 ± 1.142
3.824SerAsn: 3.824 ± 1.128
2.353SerPro: 2.353 ± 0.368
2.353SerGln: 2.353 ± 0.335
4.118SerArg: 4.118 ± 0.835
6.471SerSer: 6.471 ± 1.629
2.941SerThr: 2.941 ± 0.338
4.706SerVal: 4.706 ± 0.737
0.882SerTrp: 0.882 ± 0.482
3.824SerTyr: 3.824 ± 1.128
0.0SerXaa: 0.0 ± 0.0
Thr
1.471ThrAla: 1.471 ± 0.799
0.588ThrCys: 0.588 ± 0.296
2.059ThrAsp: 2.059 ± 0.803
3.235ThrGlu: 3.235 ± 0.865
2.059ThrPhe: 2.059 ± 1.125
2.353ThrGly: 2.353 ± 0.335
1.765ThrHis: 1.765 ± 0.588
3.824ThrIle: 3.824 ± 1.702
3.529ThrLys: 3.529 ± 0.605
5.882ThrLeu: 5.882 ± 1.71
0.882ThrMet: 0.882 ± 0.85
3.824ThrAsn: 3.824 ± 1.583
1.176ThrPro: 1.176 ± 0.873
1.765ThrGln: 1.765 ± 0.929
2.353ThrArg: 2.353 ± 0.966
4.706ThrSer: 4.706 ± 1.079
2.941ThrThr: 2.941 ± 0.339
2.941ThrVal: 2.941 ± 0.447
0.882ThrTrp: 0.882 ± 1.464
0.882ThrTyr: 0.882 ± 0.667
0.0ThrXaa: 0.0 ± 0.0
Val
1.765ValAla: 1.765 ± 0.113
1.176ValCys: 1.176 ± 0.643
5.882ValAsp: 5.882 ± 1.464
3.824ValGlu: 3.824 ± 1.307
2.059ValPhe: 2.059 ± 0.22
2.941ValGly: 2.941 ± 0.571
0.882ValHis: 0.882 ± 0.482
4.118ValIle: 4.118 ± 1.321
5.294ValLys: 5.294 ± 2.049
5.588ValLeu: 5.588 ± 1.206
1.471ValMet: 1.471 ± 0.607
4.412ValAsn: 4.412 ± 0.694
2.941ValPro: 2.941 ± 0.447
2.647ValGln: 2.647 ± 0.662
1.765ValArg: 1.765 ± 0.496
6.176ValSer: 6.176 ± 1.058
3.235ValThr: 3.235 ± 0.421
3.824ValVal: 3.824 ± 2.087
1.471ValTrp: 1.471 ± 0.607
1.176ValTyr: 1.176 ± 0.591
0.0ValXaa: 0.0 ± 0.0
Trp
0.588TrpAla: 0.588 ± 0.369
0.0TrpCys: 0.0 ± 0.0
0.588TrpAsp: 0.588 ± 0.296
1.176TrpGlu: 1.176 ± 0.746
1.471TrpPhe: 1.471 ± 1.804
0.882TrpGly: 0.882 ± 0.294
0.588TrpHis: 0.588 ± 0.321
0.882TrpIle: 0.882 ± 0.309
0.882TrpLys: 0.882 ± 0.294
2.059TrpLeu: 2.059 ± 1.013
0.294TrpMet: 0.294 ± 0.161
0.294TrpAsn: 0.294 ± 0.488
0.294TrpPro: 0.294 ± 0.362
0.0TrpGln: 0.0 ± 0.0
0.0TrpArg: 0.0 ± 0.0
0.588TrpSer: 0.588 ± 0.369
0.882TrpThr: 0.882 ± 1.058
1.176TrpVal: 1.176 ± 0.643
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
0.882TyrAla: 0.882 ± 0.294
2.059TyrCys: 2.059 ± 0.568
0.882TyrAsp: 0.882 ± 0.482
1.176TyrGlu: 1.176 ± 0.311
1.176TyrPhe: 1.176 ± 0.297
2.353TyrGly: 2.353 ± 0.998
0.588TyrHis: 0.588 ± 0.321
2.941TyrIle: 2.941 ± 0.556
1.471TyrLys: 1.471 ± 0.517
2.059TyrLeu: 2.059 ± 1.051
0.294TyrMet: 0.294 ± 0.161
2.353TyrAsn: 2.353 ± 1.557
0.882TyrPro: 0.882 ± 0.309
1.176TyrGln: 1.176 ± 0.591
1.176TyrArg: 1.176 ± 0.643
3.235TyrSer: 3.235 ± 0.841
2.059TyrThr: 2.059 ± 1.097
0.882TyrVal: 0.882 ± 0.482
0.294TyrTrp: 0.294 ± 0.488
0.588TyrTyr: 0.588 ± 0.321
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 4 proteins (3401 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski