Torque teno midi virus 2

Taxonomy: Viruses; Anelloviridae; Gammatorquevirus

Average proteome isoelectric point is 7.45

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A4GZA1|A4GZA1_9VIRU Capsid protein OS=Torque teno midi virus 2 OX=687380 PE=3 SV=1
MM1 pKa = 7.24QNISYY6 pKa = 10.24TDD8 pKa = 4.05FYY10 pKa = 11.48KK11 pKa = 9.67PTPYY15 pKa = 9.58NTDD18 pKa = 2.73TKK20 pKa = 9.85NQIWLSQLADD30 pKa = 4.2SHH32 pKa = 7.36DD33 pKa = 3.57NWCNCDD39 pKa = 3.79FPFAHH44 pKa = 7.26LLASIFPPGHH54 pKa = 6.98KK55 pKa = 10.31DD56 pKa = 2.73RR57 pKa = 11.84TRR59 pKa = 11.84TINQILQRR67 pKa = 11.84DD68 pKa = 4.31FRR70 pKa = 11.84QKK72 pKa = 10.5CLSGGADD79 pKa = 3.34AKK81 pKa = 11.19DD82 pKa = 3.29SGLAGEE88 pKa = 5.2DD89 pKa = 4.13LEE91 pKa = 6.61KK92 pKa = 10.99DD93 pKa = 3.61GQKK96 pKa = 10.98DD97 pKa = 3.15GGKK100 pKa = 8.49YY101 pKa = 8.52TEE103 pKa = 4.52EE104 pKa = 4.18DD105 pKa = 3.47LPRR108 pKa = 11.84DD109 pKa = 3.52EE110 pKa = 5.63VEE112 pKa = 4.12EE113 pKa = 3.85LLAAVEE119 pKa = 4.64SAASRR124 pKa = 3.62

Molecular weight: 13.98 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A4GZA1|A4GZA1_9VIRU Capsid protein OS=Torque teno midi virus 2 OX=687380 PE=3 SV=1
MM1 pKa = 7.35PFWWGRR7 pKa = 11.84RR8 pKa = 11.84KK9 pKa = 10.22RR10 pKa = 11.84FWLGRR15 pKa = 11.84RR16 pKa = 11.84RR17 pKa = 11.84FRR19 pKa = 11.84KK20 pKa = 8.78RR21 pKa = 11.84WPKK24 pKa = 9.9RR25 pKa = 11.84RR26 pKa = 11.84RR27 pKa = 11.84KK28 pKa = 7.51IHH30 pKa = 6.02RR31 pKa = 11.84RR32 pKa = 11.84RR33 pKa = 11.84FTKK36 pKa = 10.08RR37 pKa = 11.84RR38 pKa = 11.84GRR40 pKa = 11.84RR41 pKa = 11.84TTRR44 pKa = 11.84RR45 pKa = 11.84RR46 pKa = 11.84RR47 pKa = 11.84KK48 pKa = 9.21RR49 pKa = 11.84RR50 pKa = 11.84FKK52 pKa = 10.79VRR54 pKa = 11.84RR55 pKa = 11.84KK56 pKa = 9.51KK57 pKa = 10.47PKK59 pKa = 9.15IPIYY63 pKa = 9.73QWQPDD68 pKa = 4.33SIRR71 pKa = 11.84KK72 pKa = 9.16CKK74 pKa = 10.08IKK76 pKa = 10.8GVGTLVLGAHH86 pKa = 7.12GKK88 pKa = 9.59QFVCYY93 pKa = 9.31TDD95 pKa = 3.25VEE97 pKa = 4.81TRR99 pKa = 11.84APPPKK104 pKa = 10.39APGGGGFGCKK114 pKa = 8.44QFSLQYY120 pKa = 10.42LYY122 pKa = 11.14EE123 pKa = 4.19EE124 pKa = 4.13YY125 pKa = 10.63RR126 pKa = 11.84FRR128 pKa = 11.84NNIWTHH134 pKa = 4.39TNINLDD140 pKa = 3.4LVRR143 pKa = 11.84YY144 pKa = 9.23LRR146 pKa = 11.84AAFTFYY152 pKa = 10.65RR153 pKa = 11.84HH154 pKa = 6.56PDD156 pKa = 2.51IDD158 pKa = 4.5FIINYY163 pKa = 8.94DD164 pKa = 3.87RR165 pKa = 11.84QPPFYY170 pKa = 9.82LDD172 pKa = 2.95KK173 pKa = 10.33FTYY176 pKa = 9.35PLCHH180 pKa = 6.4PQNLLLGKK188 pKa = 9.87HH189 pKa = 6.05KK190 pKa = 10.53IILLSKK196 pKa = 10.09ASKK199 pKa = 10.57PNGKK203 pKa = 8.95VKK205 pKa = 10.38KK206 pKa = 10.1RR207 pKa = 11.84IIIKK211 pKa = 9.68PPKK214 pKa = 10.17QMITKK219 pKa = 9.29WFFQEE224 pKa = 4.3QFTTQPLLSLRR235 pKa = 11.84AAAASFQYY243 pKa = 10.07PHH245 pKa = 7.26IGCCMPNRR253 pKa = 11.84VVTFSALNPGFYY265 pKa = 9.96QQGNWSLAQQEE276 pKa = 4.41THH278 pKa = 7.24PYY280 pKa = 9.62SPWPQIPRR288 pKa = 11.84RR289 pKa = 11.84LIFWDD294 pKa = 4.25VPASEE299 pKa = 5.15IPTDD303 pKa = 3.65GQQRR307 pKa = 11.84LDD309 pKa = 3.62FSKK312 pKa = 10.44KK313 pKa = 9.27HH314 pKa = 6.0AFITDD319 pKa = 2.9IHH321 pKa = 7.14SYY323 pKa = 10.26SDD325 pKa = 3.3SVSYY329 pKa = 11.04NKK331 pKa = 10.6GYY333 pKa = 7.92FTSKK337 pKa = 9.62ILKK340 pKa = 10.07AKK342 pKa = 9.93FVSKK346 pKa = 10.49DD347 pKa = 3.05ISDD350 pKa = 3.57TAGIGNLPLNLCRR363 pKa = 11.84YY364 pKa = 9.41NPAIDD369 pKa = 3.47TGKK372 pKa = 11.15GNTIWLHH379 pKa = 5.47SNLVNSYY386 pKa = 10.82SKK388 pKa = 10.02PQHH391 pKa = 6.82DD392 pKa = 4.37EE393 pKa = 4.51DD394 pKa = 5.81IIITGMPIWMLLFGWLSYY412 pKa = 9.29VQHH415 pKa = 6.05VKK417 pKa = 10.58KK418 pKa = 10.54PPDD421 pKa = 3.78FYY423 pKa = 11.6LSFTVLIEE431 pKa = 4.17SPAIEE436 pKa = 4.31VASASATPTPVIPIDD451 pKa = 3.38TSFINGNPPYY461 pKa = 9.97NQTITIRR468 pKa = 11.84DD469 pKa = 3.72KK470 pKa = 10.86AHH472 pKa = 6.61WWPDD476 pKa = 3.13VYY478 pKa = 11.49NQTEE482 pKa = 4.3VLNSLVTAGPYY493 pKa = 9.33VPKK496 pKa = 10.35LDD498 pKa = 4.49NIRR501 pKa = 11.84NSTWEE506 pKa = 3.39LHH508 pKa = 5.22YY509 pKa = 10.39FYY511 pKa = 11.31NFLFKK516 pKa = 10.25WGGPEE521 pKa = 4.17STDD524 pKa = 3.6QPVADD529 pKa = 4.87PSKK532 pKa = 10.81QPIYY536 pKa = 10.62DD537 pKa = 4.08ALDD540 pKa = 3.56KK541 pKa = 10.79QQQTVQIRR549 pKa = 11.84NPAKK553 pKa = 10.04QKK555 pKa = 10.26YY556 pKa = 7.21ATIMHH561 pKa = 6.99PWDD564 pKa = 3.42VRR566 pKa = 11.84RR567 pKa = 11.84GIITNKK573 pKa = 9.42ALKK576 pKa = 10.28RR577 pKa = 11.84MYY579 pKa = 10.2EE580 pKa = 3.98NLSIDD585 pKa = 3.6STFEE589 pKa = 3.92ADD591 pKa = 3.95SIASKK596 pKa = 10.34RR597 pKa = 11.84KK598 pKa = 9.41RR599 pKa = 11.84VTGPCFTALQEE610 pKa = 4.23INQEE614 pKa = 3.93EE615 pKa = 4.71RR616 pKa = 11.84TCLQTLCEE624 pKa = 4.0EE625 pKa = 4.89NIFQEE630 pKa = 4.8TPQEE634 pKa = 4.0EE635 pKa = 4.37NLQQLILQQQQHH647 pKa = 4.92QQDD650 pKa = 3.12IKK652 pKa = 11.17YY653 pKa = 10.33NILKK657 pKa = 10.27LISQMKK663 pKa = 8.29EE664 pKa = 3.57QQNMLKK670 pKa = 10.46LHH672 pKa = 6.43TGLLNN677 pKa = 3.66

Molecular weight: 79.46 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1310

124

677

327.5

37.75

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.725 ± 0.906

1.603 ± 0.171

5.802 ± 1.275

4.58 ± 0.862

4.427 ± 0.585

4.885 ± 0.3

2.748 ± 0.209

5.878 ± 1.201

8.015 ± 0.556

8.092 ± 0.287

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.45 ± 0.2

5.344 ± 0.29

7.023 ± 0.674

6.489 ± 0.577

6.489 ± 0.63

6.794 ± 1.265

6.412 ± 0.302

2.824 ± 0.645

1.908 ± 0.458

3.511 ± 0.487
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski