Aquimarina brevivitae

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aquimarina

Average proteome isoelectric point is 6.47

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3416 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4Q7PGE2|A0A4Q7PGE2_9FLAO Cytochrome c peroxidase OS=Aquimarina brevivitae OX=323412 GN=EV197_0783 PE=4 SV=1
MM1 pKa = 7.91KK2 pKa = 9.85YY3 pKa = 10.59LKK5 pKa = 10.26IIIGLFLSLTVIVSCKK21 pKa = 9.99EE22 pKa = 3.81DD23 pKa = 3.78DD24 pKa = 3.61SFEE27 pKa = 4.12YY28 pKa = 10.74LDD30 pKa = 4.51AVEE33 pKa = 4.77APSNITALVNITQDD47 pKa = 2.77NTGFVTIIPTGKK59 pKa = 9.76GAVSFDD65 pKa = 3.65VYY67 pKa = 10.97FGDD70 pKa = 4.16GTLEE74 pKa = 4.14PVNVTPGEE82 pKa = 4.22KK83 pKa = 9.71AEE85 pKa = 4.7HH86 pKa = 6.53IYY88 pKa = 11.08EE89 pKa = 4.37EE90 pKa = 4.49GSYY93 pKa = 9.62EE94 pKa = 3.73LRR96 pKa = 11.84IVGKK100 pKa = 9.71SVSGKK105 pKa = 4.98TTEE108 pKa = 3.88AVQPLVVSFNPPQNLEE124 pKa = 3.96VLIEE128 pKa = 3.94NDD130 pKa = 3.25AAVSKK135 pKa = 10.16QVNVTATAEE144 pKa = 4.14FAVSYY149 pKa = 10.57DD150 pKa = 3.47VYY152 pKa = 10.87FGEE155 pKa = 4.7NADD158 pKa = 4.13DD159 pKa = 4.12TPVSANIGDD168 pKa = 4.04TVSYY172 pKa = 10.0IYY174 pKa = 10.71EE175 pKa = 3.93NAGTYY180 pKa = 7.54TIRR183 pKa = 11.84VVARR187 pKa = 11.84GGAIEE192 pKa = 4.09TTEE195 pKa = 3.93YY196 pKa = 10.73TEE198 pKa = 4.21EE199 pKa = 4.09FTVTEE204 pKa = 3.87ILQPVASAPAPPARR218 pKa = 11.84STQDD222 pKa = 3.19VISIFSAAYY231 pKa = 10.21DD232 pKa = 3.79DD233 pKa = 4.86VAGTDD238 pKa = 3.87YY239 pKa = 11.09FPDD242 pKa = 3.45WGQGSQGSSWSSFDD256 pKa = 4.49LNGDD260 pKa = 3.55EE261 pKa = 3.92MLQYY265 pKa = 10.96INLSYY270 pKa = 10.74QGIQFGSPVDD280 pKa = 3.64VSNMEE285 pKa = 4.85FIHH288 pKa = 7.55LDD290 pKa = 2.85VWTSGDD296 pKa = 3.14VSRR299 pKa = 11.84IEE301 pKa = 3.83TSLISVSNGEE311 pKa = 4.02RR312 pKa = 11.84PVWSDD317 pKa = 2.67LTAGEE322 pKa = 4.39WTSIDD327 pKa = 3.6IPISAYY333 pKa = 9.27TDD335 pKa = 3.29QNGFTVADD343 pKa = 3.31IHH345 pKa = 5.79QLKK348 pKa = 10.13FVGDD352 pKa = 3.92PWAAGTVFIDD362 pKa = 3.47NIYY365 pKa = 10.25FYY367 pKa = 10.59RR368 pKa = 11.84APTEE372 pKa = 4.23VINFPINFEE381 pKa = 4.79SNNLTYY387 pKa = 9.62TWSGFGNADD396 pKa = 4.33FGPIPASTVNNPDD409 pKa = 3.36PSGMNFSNTVVEE421 pKa = 4.2IQKK424 pKa = 10.0PAGAQVWAGASMNLSGTADD443 pKa = 4.23FSNGTTVTMKK453 pKa = 9.95VWSPRR458 pKa = 11.84AGVPVLFKK466 pKa = 10.68MEE468 pKa = 4.66DD469 pKa = 3.25QTSAPDD475 pKa = 3.73GNGNPSVFVEE485 pKa = 4.57VQATTTVANAWEE497 pKa = 4.32EE498 pKa = 4.02LSFDD502 pKa = 3.46LTSYY506 pKa = 11.19NGFSTSIPYY515 pKa = 10.69SNVIIFPDD523 pKa = 4.56FGNMGAGEE531 pKa = 4.55AFYY534 pKa = 10.84FDD536 pKa = 5.54DD537 pKa = 5.8IEE539 pKa = 4.26IASLKK544 pKa = 10.6LPLNFEE550 pKa = 4.44VSTLTYY556 pKa = 8.48TWAGFGDD563 pKa = 4.57PNFGPIPAATATNPDD578 pKa = 3.24QTGLNTSATVTEE590 pKa = 4.26IQKK593 pKa = 8.85PTGSQVWAGASLALDD608 pKa = 3.96GPVDD612 pKa = 4.25FSNGTTISLKK622 pKa = 9.73VWSPRR627 pKa = 11.84AGVPILFKK635 pKa = 10.6MEE637 pKa = 4.41DD638 pKa = 3.49TTSPPDD644 pKa = 3.51GNGNPTVFVEE654 pKa = 4.68VQSSTTVANSWEE666 pKa = 4.66EE667 pKa = 3.6ITFDD671 pKa = 3.27LTSFNGFSTDD681 pKa = 2.37ISYY684 pKa = 11.51YY685 pKa = 10.52NVIIFPDD692 pKa = 4.59FGNMGAGEE700 pKa = 4.45TFYY703 pKa = 11.13FDD705 pKa = 7.19DD706 pKa = 5.0IFLTNN711 pKa = 3.53

Molecular weight: 76.73 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4Q7P1B5|A0A4Q7P1B5_9FLAO SprB-like repeat protein (Fragment) OS=Aquimarina brevivitae OX=323412 GN=EV197_2570 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.59RR3 pKa = 11.84TFQPSKK9 pKa = 10.15RR10 pKa = 11.84KK11 pKa = 9.6RR12 pKa = 11.84KK13 pKa = 8.29NKK15 pKa = 9.34HH16 pKa = 4.03GFRR19 pKa = 11.84EE20 pKa = 4.05RR21 pKa = 11.84MASVNGRR28 pKa = 11.84KK29 pKa = 9.21VLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.09GRR39 pKa = 11.84KK40 pKa = 7.97KK41 pKa = 10.59LSVSSEE47 pKa = 3.56IRR49 pKa = 11.84HH50 pKa = 4.99KK51 pKa = 10.53HH52 pKa = 4.45

Molecular weight: 6.26 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3416

0

3416

1162327

27

4967

340.3

38.38

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.545 ± 0.045

0.751 ± 0.015

5.736 ± 0.034

6.59 ± 0.042

5.007 ± 0.033

6.298 ± 0.047

1.725 ± 0.021

7.891 ± 0.038

7.493 ± 0.065

9.374 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.01 ± 0.022

5.892 ± 0.045

3.453 ± 0.026

3.785 ± 0.024

3.492 ± 0.033

6.323 ± 0.035

6.151 ± 0.059

6.206 ± 0.033

1.037 ± 0.013

4.242 ± 0.03
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski