Tortoise microvirus 62

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 6.12

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W6M5|A0A4P8W6M5_9VIRU Uncharacterized protein OS=Tortoise microvirus 62 OX=2583168 PE=4 SV=1
MM1 pKa = 7.54KK2 pKa = 10.36NALYY6 pKa = 10.36CLYY9 pKa = 11.25NMLSTRR15 pKa = 11.84YY16 pKa = 9.69GDD18 pKa = 3.76VVCFPTDD25 pKa = 3.06AYY27 pKa = 10.71AVQRR31 pKa = 11.84LHH33 pKa = 7.36EE34 pKa = 4.58DD35 pKa = 4.09LKK37 pKa = 11.31PEE39 pKa = 4.0ALKK42 pKa = 10.68EE43 pKa = 3.95IEE45 pKa = 4.27LCKK48 pKa = 10.1IGYY51 pKa = 9.42IDD53 pKa = 3.94ISTGIAEE60 pKa = 4.16VHH62 pKa = 5.81PPIRR66 pKa = 11.84IPLIVDD72 pKa = 3.58EE73 pKa = 4.74SVIPIDD79 pKa = 3.9NLEE82 pKa = 4.03KK83 pKa = 10.88

Molecular weight: 9.42 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4V1FVZ9|A0A4V1FVZ9_9VIRU Uncharacterized protein OS=Tortoise microvirus 62 OX=2583168 PE=4 SV=1
MM1 pKa = 7.85RR2 pKa = 11.84FTMRR6 pKa = 11.84SIAPSTRR13 pKa = 11.84LVGAFRR19 pKa = 11.84DD20 pKa = 3.99TCSMLVGSWDD30 pKa = 3.82CLHH33 pKa = 6.35FTAKK37 pKa = 10.03ALSRR41 pKa = 11.84ILFVPRR47 pKa = 11.84SWRR50 pKa = 11.84CLMLTLQTVLFFQVAMLVVLISPFYY75 pKa = 9.96FLKK78 pKa = 10.45RR79 pKa = 11.84LCRR82 pKa = 11.84RR83 pKa = 11.84LTIYY87 pKa = 10.86

Molecular weight: 10.21 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

1761

83

604

220.1

24.89

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.666 ± 0.885

1.533 ± 0.543

6.133 ± 0.776

4.884 ± 1.089

5.508 ± 0.709

5.224 ± 0.497

1.931 ± 0.424

4.827 ± 0.872

4.202 ± 0.872

9.143 ± 0.789

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.896 ± 0.51

4.429 ± 0.685

4.656 ± 0.591

3.805 ± 1.406

6.019 ± 0.68

10.392 ± 1.108

5.508 ± 0.6

4.997 ± 0.555

1.022 ± 0.186

5.224 ± 0.515
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski