Exidia glandulosa HHB12029

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetes incertae sedis; Auriculariales; Exidiaceae; Exidia; Exidia glandulosa

Average proteome isoelectric point is 6.76

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 26313 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A165P2Z6|A0A165P2Z6_EXIGL Uncharacterized protein OS=Exidia glandulosa HHB12029 OX=1314781 GN=EXIGLDRAFT_65935 PE=4 SV=1
MM1 pKa = 7.7RR2 pKa = 11.84FSVLLVAAAATLVSAQTSSSLNNLFGRR29 pKa = 11.84ATDD32 pKa = 3.99TSACASDD39 pKa = 5.15CGAQSAAANLDD50 pKa = 3.37AATKK54 pKa = 9.08CTTDD58 pKa = 3.2SGGDD62 pKa = 3.5STKK65 pKa = 10.98LQICVCQSPALVQGVNDD82 pKa = 4.42CMQKK86 pKa = 9.99EE87 pKa = 4.64CPDD90 pKa = 3.95DD91 pKa = 3.51AHH93 pKa = 6.7FFQDD97 pKa = 3.04GCDD100 pKa = 3.4IITGKK105 pKa = 9.14TSTTGSDD112 pKa = 3.54PASTPSDD119 pKa = 3.73SASTPSDD126 pKa = 3.54SASTPTDD133 pKa = 3.24SDD135 pKa = 3.9SASTPTASGTGSAGSLGVSAGVALSSVLFAGVALLL170 pKa = 4.44

Molecular weight: 16.59 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A165QPS0|A0A165QPS0_EXIGL SecE/sec61-gamma protein OS=Exidia glandulosa HHB12029 OX=1314781 GN=EXIGLDRAFT_715939 PE=3 SV=1
MM1 pKa = 7.38NLTYY5 pKa = 8.06PTTLHH10 pKa = 5.07AHH12 pKa = 6.06IMFGHH17 pKa = 6.18TSRR20 pKa = 11.84SRR22 pKa = 11.84STRR25 pKa = 11.84FASTRR30 pKa = 11.84RR31 pKa = 11.84SRR33 pKa = 11.84RR34 pKa = 11.84NPSLRR39 pKa = 11.84VPAVRR44 pKa = 11.84RR45 pKa = 11.84SKK47 pKa = 9.72PTFGQRR53 pKa = 11.84IKK55 pKa = 10.83AALGQRR61 pKa = 11.84PRR63 pKa = 11.84TAGRR67 pKa = 11.84SSRR70 pKa = 11.84TGNRR74 pKa = 11.84HH75 pKa = 3.12VTLVRR80 pKa = 11.84RR81 pKa = 11.84GNRR84 pKa = 11.84THH86 pKa = 6.1RR87 pKa = 11.84TVVPSRR93 pKa = 11.84SKK95 pKa = 10.25PSLAARR101 pKa = 11.84IKK103 pKa = 10.68RR104 pKa = 11.84LFNVPLSPNAQRR116 pKa = 11.84SSTRR120 pKa = 11.84RR121 pKa = 11.84RR122 pKa = 11.84MHH124 pKa = 6.23AA125 pKa = 3.29

Molecular weight: 14.27 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

26305

8

26313

9701046

49

4819

368.7

40.59

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.084 ± 0.015

1.455 ± 0.008

5.824 ± 0.011

5.308 ± 0.015

3.679 ± 0.01

6.305 ± 0.015

2.65 ± 0.007

4.252 ± 0.01

3.69 ± 0.016

9.59 ± 0.02

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.996 ± 0.006

2.954 ± 0.009

6.682 ± 0.019

3.509 ± 0.01

6.962 ± 0.016

8.045 ± 0.018

6.154 ± 0.013

6.815 ± 0.012

1.543 ± 0.006

2.505 ± 0.008
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski