Capybara microvirus Cap1_SP_158

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.94

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W7Y9|A0A4P8W7Y9_9VIRU Uncharacterized protein OS=Capybara microvirus Cap1_SP_158 OX=2585394 PE=4 SV=1
MM1 pKa = 7.48NKK3 pKa = 9.85NSMFQEE9 pKa = 4.72HH10 pKa = 7.16PSSFQLFMLGDD21 pKa = 3.17ICEE24 pKa = 4.54NMNAMCTEE32 pKa = 4.3FDD34 pKa = 4.47SVDD37 pKa = 3.61LLLPMDD43 pKa = 3.91EE44 pKa = 4.38TGEE47 pKa = 4.16RR48 pKa = 11.84CCIPLEE54 pKa = 4.13SLGTVGEE61 pKa = 4.65FYY63 pKa = 10.66RR64 pKa = 11.84KK65 pKa = 9.37EE66 pKa = 4.07SIVYY70 pKa = 9.99EE71 pKa = 4.24EE72 pKa = 4.09EE73 pKa = 4.1HH74 pKa = 6.52LL75 pKa = 4.2

Molecular weight: 8.67 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W473|A0A4P8W473_9VIRU Major capsid protein OS=Capybara microvirus Cap1_SP_158 OX=2585394 PE=3 SV=1
MM1 pKa = 7.66SSNNQAWYY9 pKa = 8.25TWSPPKK15 pKa = 8.91NTKK18 pKa = 8.59YY19 pKa = 8.29WHH21 pKa = 6.87GYY23 pKa = 8.71LPIGIAIRR31 pKa = 11.84DD32 pKa = 3.84NFNTANAIRR41 pKa = 11.84RR42 pKa = 11.84AANNFNTDD50 pKa = 3.12TTSDD54 pKa = 3.28TKK56 pKa = 10.64TLQKK60 pKa = 10.69SLQSLIKK67 pKa = 10.05GQTSAKK73 pKa = 6.89TTTNNNINNGYY84 pKa = 9.67VDD86 pKa = 4.01TGSSSLDD93 pKa = 3.22SSLQTLAEE101 pKa = 4.52HH102 pKa = 6.02NTNASIEE109 pKa = 4.17INRR112 pKa = 11.84MNNAFNASEE121 pKa = 4.0AQKK124 pKa = 10.87NRR126 pKa = 11.84DD127 pKa = 3.21WQEE130 pKa = 4.05SMSNTAHH137 pKa = 5.31QRR139 pKa = 11.84EE140 pKa = 4.37VEE142 pKa = 4.07DD143 pKa = 4.69LKK145 pKa = 11.41AAGLNPVLSAGGQGAATGSGSAASSSGNANVDD177 pKa = 3.63SAVNALASIQTAQISAAAMVSAAAIAAQASMYY209 pKa = 10.87GSDD212 pKa = 3.52NALSGTKK219 pKa = 10.33YY220 pKa = 9.86STDD223 pKa = 2.75LTYY226 pKa = 11.36YY227 pKa = 8.85KK228 pKa = 10.49TNSPWNLINRR238 pKa = 11.84LLPNSDD244 pKa = 3.17TSAKK248 pKa = 10.43DD249 pKa = 2.97ILRR252 pKa = 11.84SIIGKK257 pKa = 9.18NEE259 pKa = 3.78VIFRR263 pKa = 11.84RR264 pKa = 3.94

Molecular weight: 28.2 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1439

75

563

287.8

32.66

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.505 ± 1.592

1.737 ± 0.618

5.768 ± 0.478

6.185 ± 1.416

4.864 ± 0.955

5.559 ± 0.305

2.293 ± 0.574

5.142 ± 0.414

5.073 ± 1.182

7.714 ± 0.991

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.015 ± 0.409

6.115 ± 1.493

4.1 ± 0.474

4.448 ± 0.325

4.656 ± 0.258

8.826 ± 1.13

6.115 ± 0.638

4.656 ± 0.715

1.251 ± 0.283

5.976 ± 0.989
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski