Acaryochloris marina (strain MBIC 11017)

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Cyanobacteria/Melainabacteria group; Cyanobacteria; Synechococcales; Acaryochloridaceae; Acaryochloris; Acaryochloris marina

Average proteome isoelectric point is 6.34

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8172 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|B0C6L6|B0C6L6_ACAM1 TPR domain protein OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=AM1_1406 PE=4 SV=1
MM1 pKa = 7.8ILTLPEE7 pKa = 3.91NEE9 pKa = 4.14EE10 pKa = 4.02RR11 pKa = 11.84DD12 pKa = 3.55LEE14 pKa = 4.33LQVRR18 pKa = 11.84HH19 pKa = 5.29QTPDD23 pKa = 3.32DD24 pKa = 4.25AQPSAQLYY32 pKa = 10.0EE33 pKa = 4.26EE34 pKa = 4.16THH36 pKa = 6.71DD37 pKa = 3.68GQRR40 pKa = 11.84CHH42 pKa = 6.68GVDD45 pKa = 4.16PDD47 pKa = 3.94QDD49 pKa = 4.18CDD51 pKa = 3.4WVYY54 pKa = 11.27TDD56 pKa = 4.26SDD58 pKa = 3.85YY59 pKa = 11.82DD60 pKa = 3.63EE61 pKa = 4.71FF62 pKa = 6.52

Molecular weight: 7.31 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A8ZLM9|A8ZLM9_ACAM1 Uncharacterized protein OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=AM1_B0338 PE=4 SV=1
MM1 pKa = 7.54HH2 pKa = 7.27SPYY5 pKa = 11.02SLNQLGALVRR15 pKa = 11.84PFLLSLQAPLQQFQLAVEE33 pKa = 4.35LVEE36 pKa = 4.62KK37 pKa = 10.7ARR39 pKa = 11.84SSNLLAITCRR49 pKa = 11.84QKK51 pKa = 10.66IFQTNINPNRR61 pKa = 11.84MPMRR65 pKa = 11.84WDD67 pKa = 3.15FRR69 pKa = 11.84DD70 pKa = 3.31RR71 pKa = 11.84DD72 pKa = 3.57ISLDD76 pKa = 3.69TQHH79 pKa = 7.16DD80 pKa = 4.1VPARR84 pKa = 11.84MLADD88 pKa = 3.5NPYY91 pKa = 10.39CLDD94 pKa = 3.49IKK96 pKa = 10.68IIGYY100 pKa = 10.47GSVQGNRR107 pKa = 11.84NPTNLGQLNLITLNWAGLEE126 pKa = 3.93LRR128 pKa = 11.84EE129 pKa = 4.49QEE131 pKa = 4.16GTVLSKK137 pKa = 10.83LLKK140 pKa = 9.23AWKK143 pKa = 8.37TVTSLPHH150 pKa = 5.17GLKK153 pKa = 10.23RR154 pKa = 11.84RR155 pKa = 11.84INPAQNILQYY165 pKa = 11.32LRR167 pKa = 11.84MHH169 pKa = 7.3ILQVWQDD176 pKa = 3.95FLSLSQVFLLRR187 pKa = 11.84VIARR191 pKa = 11.84IGSICRR197 pKa = 11.84NDD199 pKa = 3.51VLRR202 pKa = 11.84LQRR205 pKa = 11.84TSVYY209 pKa = 10.5LALTATDD216 pKa = 5.14PIFSLSQRR224 pKa = 11.84IVVHH228 pKa = 6.58RR229 pKa = 11.84ATSLKK234 pKa = 9.85PRR236 pKa = 11.84QHH238 pKa = 6.61PCLLLKK244 pKa = 10.88ARR246 pKa = 11.84VNPVAVRR253 pKa = 11.84HH254 pKa = 5.93GEE256 pKa = 3.96HH257 pKa = 6.02VLIIAFSRR265 pKa = 11.84EE266 pKa = 4.33VLCSPP271 pKa = 5.2

Molecular weight: 30.93 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8172

0

8172

2253963

29

3597

275.8

30.69

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.318 ± 0.03

1.102 ± 0.011

5.281 ± 0.025

5.782 ± 0.029

3.893 ± 0.021

6.767 ± 0.038

2.218 ± 0.017

6.05 ± 0.024

4.283 ± 0.028

11.033 ± 0.037

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.01 ± 0.013

3.755 ± 0.026

5.065 ± 0.027

6.055 ± 0.035

5.156 ± 0.026

6.612 ± 0.028

5.803 ± 0.032

6.451 ± 0.022

1.524 ± 0.016

2.842 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski