Ferrimonas marina

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Ferrimonadaceae; Ferrimonas

Average proteome isoelectric point is 6.04

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4625 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1M5Y098|A0A1M5Y098_9GAMM Uncharacterized protein OS=Ferrimonas marina OX=299255 GN=SAMN02745129_3842 PE=4 SV=1
MM1 pKa = 7.73HH2 pKa = 7.23YY3 pKa = 8.38NTSEE7 pKa = 3.97LCDD10 pKa = 4.12LYY12 pKa = 11.24GDD14 pKa = 4.04QIDD17 pKa = 3.89VVEE20 pKa = 4.47PMFSNFGGCPSFGGQIHH37 pKa = 5.36TVKK40 pKa = 10.62CFEE43 pKa = 5.1DD44 pKa = 3.41NSAIAEE50 pKa = 4.06ALEE53 pKa = 3.75QDD55 pKa = 3.92GQGKK59 pKa = 9.01VLLVDD64 pKa = 4.2GGGSMRR70 pKa = 11.84RR71 pKa = 11.84ALVDD75 pKa = 3.33QEE77 pKa = 4.37LANLAVSNQWEE88 pKa = 4.26GLVIYY93 pKa = 10.37GSVRR97 pKa = 11.84DD98 pKa = 3.79VDD100 pKa = 3.93ALEE103 pKa = 5.12DD104 pKa = 3.92LDD106 pKa = 4.68LGIMALASIPVGASQHH122 pKa = 6.58GEE124 pKa = 3.99GQLDD128 pKa = 3.65VPVNFGGVTFMPEE141 pKa = 3.08DD142 pKa = 3.61HH143 pKa = 7.12LYY145 pKa = 10.82VDD147 pKa = 3.54STGIILSEE155 pKa = 4.47DD156 pKa = 3.65PLDD159 pKa = 4.28IEE161 pKa = 4.75

Molecular weight: 17.25 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1M5ZL78|A0A1M5ZL78_9GAMM Exoribonuclease 2 OS=Ferrimonas marina OX=299255 GN=rnb PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.46RR12 pKa = 11.84KK13 pKa = 9.37RR14 pKa = 11.84NHH16 pKa = 5.37GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4NGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.39GRR39 pKa = 11.84ARR41 pKa = 11.84LSAA44 pKa = 3.91

Molecular weight: 5.16 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4625

0

4625

1462360

35

2489

316.2

34.84

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.432 ± 0.043

1.05 ± 0.015

5.574 ± 0.033

6.155 ± 0.037

3.568 ± 0.024

7.73 ± 0.029

2.362 ± 0.02

4.542 ± 0.029

3.439 ± 0.032

11.471 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.577 ± 0.018

3.169 ± 0.024

4.774 ± 0.027

5.421 ± 0.043

5.803 ± 0.035

5.847 ± 0.032

4.912 ± 0.031

6.936 ± 0.032

1.477 ± 0.018

2.76 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski