Chicken associated smacovirus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cremevirales; Smacoviridae; Huchismacovirus; unclassified Huchismacovirus

Average proteome isoelectric point is 6.94

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1L6KWB5|A0A1L6KWB5_9VIRU Capsid protein OS=Chicken associated smacovirus OX=1932006 GN=CAP PE=4 SV=1
MM1 pKa = 7.6NSQTYY6 pKa = 10.45SYY8 pKa = 10.94FLDD11 pKa = 3.68LQTRR15 pKa = 11.84SDD17 pKa = 3.4RR18 pKa = 11.84VSVVKK23 pKa = 10.23VAAGGRR29 pKa = 11.84EE30 pKa = 3.84AMRR33 pKa = 11.84RR34 pKa = 11.84LLPFFAAYY42 pKa = 9.48KK43 pKa = 8.7YY44 pKa = 10.61FKK46 pKa = 10.36LGRR49 pKa = 11.84VKK51 pKa = 10.87LKK53 pKa = 9.78FVPASTLPVDD63 pKa = 3.64PTGLSLEE70 pKa = 4.56AGEE73 pKa = 4.25QTVDD77 pKa = 4.27PRR79 pKa = 11.84DD80 pKa = 3.35QFNPGLVRR88 pKa = 11.84ITNGEE93 pKa = 4.02YY94 pKa = 9.56WGNPQDD100 pKa = 4.81DD101 pKa = 4.19SQVTNMDD108 pKa = 3.26RR109 pKa = 11.84YY110 pKa = 8.59YY111 pKa = 11.3QLMLDD116 pKa = 3.72NRR118 pKa = 11.84WYY120 pKa = 10.83KK121 pKa = 10.86FNLQSGFEE129 pKa = 3.98RR130 pKa = 11.84HH131 pKa = 5.39ATPLYY136 pKa = 9.72WGIGQIRR143 pKa = 11.84QDD145 pKa = 3.81IFPGIAQNYY154 pKa = 7.3PGRR157 pKa = 11.84QAIGEE162 pKa = 4.4SEE164 pKa = 4.45VPQVISSKK172 pKa = 9.88TYY174 pKa = 9.45ISKK177 pKa = 10.37DD178 pKa = 3.15AQGSVKK184 pKa = 10.09TNLIWNSDD192 pKa = 3.28SSGWGIFQVGEE203 pKa = 4.06RR204 pKa = 11.84KK205 pKa = 9.67EE206 pKa = 4.85LGWLPTDD213 pKa = 3.45YY214 pKa = 10.76TLNEE218 pKa = 3.91QLGNFPGDD226 pKa = 3.2TGVNVPPEE234 pKa = 4.17IEE236 pKa = 4.55LLTIILPKK244 pKa = 10.11AYY246 pKa = 8.48KK247 pKa = 8.9TIYY250 pKa = 9.1YY251 pKa = 8.74YY252 pKa = 10.29RR253 pKa = 11.84VYY255 pKa = 9.82VTEE258 pKa = 4.23TVHH261 pKa = 7.23FKK263 pKa = 11.26DD264 pKa = 3.81PVAMNTVPMSDD275 pKa = 2.96STQLFNVGINGYY287 pKa = 10.24DD288 pKa = 3.43RR289 pKa = 11.84FWNVLAPGQASYY301 pKa = 11.44NVTPITSTQQYY312 pKa = 10.26NDD314 pKa = 3.19GDD316 pKa = 3.84GYY318 pKa = 10.93RR319 pKa = 11.84FRR321 pKa = 11.84EE322 pKa = 4.79GEE324 pKa = 3.86

Molecular weight: 36.83 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1L6KWB5|A0A1L6KWB5_9VIRU Capsid protein OS=Chicken associated smacovirus OX=1932006 GN=CAP PE=4 SV=1
MM1 pKa = 7.45NKK3 pKa = 9.26QAYY6 pKa = 8.55KK7 pKa = 10.82DD8 pKa = 3.66LGEE11 pKa = 4.36CQSMQTYY18 pKa = 9.37MLTIPRR24 pKa = 11.84KK25 pKa = 6.27VHH27 pKa = 5.94KK28 pKa = 9.22RR29 pKa = 11.84TLKK32 pKa = 10.49IMLEE36 pKa = 3.99QNDD39 pKa = 3.56VKK41 pKa = 10.91KK42 pKa = 11.11YY43 pKa = 10.31IIAKK47 pKa = 8.7EE48 pKa = 3.99RR49 pKa = 11.84GFGGYY54 pKa = 7.19EE55 pKa = 3.27HH56 pKa = 6.37WQIRR60 pKa = 11.84LKK62 pKa = 10.21TSNKK66 pKa = 9.82NFFIWCKK73 pKa = 10.02INIPEE78 pKa = 4.06AHH80 pKa = 6.39VEE82 pKa = 4.0EE83 pKa = 6.19AMDD86 pKa = 3.06TWDD89 pKa = 3.6YY90 pKa = 10.85EE91 pKa = 4.41RR92 pKa = 11.84KK93 pKa = 10.12EE94 pKa = 4.14GVYY97 pKa = 7.59WTSDD101 pKa = 3.2DD102 pKa = 3.82TNEE105 pKa = 3.59IRR107 pKa = 11.84ALRR110 pKa = 11.84FGKK113 pKa = 9.75PNLKK117 pKa = 9.56QKK119 pKa = 10.63RR120 pKa = 11.84VLKK123 pKa = 9.98LLKK126 pKa = 10.39YY127 pKa = 10.28QGDD130 pKa = 3.86RR131 pKa = 11.84NILVWYY137 pKa = 9.81DD138 pKa = 3.46PVGKK142 pKa = 10.12AGKK145 pKa = 9.25SWIVGHH151 pKa = 6.66LWEE154 pKa = 4.68QGKK157 pKa = 9.8ACYY160 pKa = 9.91VPPTLGTPKK169 pKa = 10.45EE170 pKa = 4.19IIQWVHH176 pKa = 4.72SAYY179 pKa = 10.67DD180 pKa = 3.63NEE182 pKa = 4.01GLIIIDD188 pKa = 4.92IPRR191 pKa = 11.84SWKK194 pKa = 9.57WNEE197 pKa = 3.71ALYY200 pKa = 9.3TAIEE204 pKa = 4.36TIKK207 pKa = 10.95DD208 pKa = 3.31GLVYY212 pKa = 10.41DD213 pKa = 4.16PRR215 pKa = 11.84YY216 pKa = 8.31SARR219 pKa = 11.84MKK221 pKa = 10.37NIRR224 pKa = 11.84GVKK227 pKa = 8.95VLVMTNTYY235 pKa = 9.8PRR237 pKa = 11.84VSALSEE243 pKa = 4.12DD244 pKa = 3.06RR245 pKa = 11.84WDD247 pKa = 4.21IINEE251 pKa = 4.0GGEE254 pKa = 4.21APLSS258 pKa = 3.72

Molecular weight: 30.25 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

582

258

324

291.0

33.54

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.811 ± 0.153

0.515 ± 0.434

5.67 ± 0.163

5.67 ± 0.876

3.265 ± 1.15

7.732 ± 0.766

1.203 ± 0.493

6.529 ± 1.34

6.529 ± 2.12

7.388 ± 0.016

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.234 ± 0.322

5.498 ± 0.308

5.326 ± 0.713

4.983 ± 1.002

5.67 ± 0.096

5.155 ± 0.858

6.014 ± 0.654

6.701 ± 0.595

3.093 ± 0.785

6.014 ± 0.394
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski