Phytophthora palmivora var. palmivora

Taxonomy: cellular organisms; Eukaryota; Sar; Stramenopiles; Oomycota; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora palmivora

Average proteome isoelectric point is 6.65

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 24468 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2P4XQG8|A0A2P4XQG8_9STRA Replication factor C subunit OS=Phytophthora palmivora var. palmivora OX=611791 GN=PHPALM_16200 PE=4 SV=1
MM1 pKa = 7.65NSTQSYY7 pKa = 7.24EE8 pKa = 4.16EE9 pKa = 4.36KK10 pKa = 10.99YY11 pKa = 8.26EE12 pKa = 4.1TLSQRR17 pKa = 11.84SADD20 pKa = 3.53LDD22 pKa = 3.92EE23 pKa = 5.7FGLEE27 pKa = 4.61HH28 pKa = 7.43GDD30 pKa = 3.27DD31 pKa = 3.67HH32 pKa = 6.81YY33 pKa = 11.56RR34 pKa = 11.84RR35 pKa = 11.84PTMYY39 pKa = 10.82AMPSIDD45 pKa = 3.54FAEE48 pKa = 4.86DD49 pKa = 3.59GVVDD53 pKa = 3.57SWVDD57 pKa = 3.18RR58 pKa = 11.84YY59 pKa = 10.42GANKK63 pKa = 10.44ADD65 pKa = 3.71FTYY68 pKa = 10.91VATVPEE74 pKa = 4.71TISVGNEE81 pKa = 3.63SQGPQRR87 pKa = 11.84VGFYY91 pKa = 10.44IPVLNEE97 pKa = 3.5QIQRR101 pKa = 11.84TSEE104 pKa = 3.87NAQVAMALLARR115 pKa = 11.84TFRR118 pKa = 11.84KK119 pKa = 9.78VVEE122 pKa = 4.81LPWSTLEE129 pKa = 4.04LLDD132 pKa = 4.79WALQWSVMPVILEE145 pKa = 4.59DD146 pKa = 3.56PTSEE150 pKa = 3.38IWAEE154 pKa = 4.31DD155 pKa = 3.61LFTPCSTKK163 pKa = 10.65CLISCSIDD171 pKa = 4.0DD172 pKa = 4.18FTDD175 pKa = 3.73CSGSEE180 pKa = 3.89ICDD183 pKa = 4.0DD184 pKa = 4.12EE185 pKa = 7.2LDD187 pKa = 5.09DD188 pKa = 5.62DD189 pKa = 5.18EE190 pKa = 5.47EE191 pKa = 4.62WSCSDD196 pKa = 4.05SEE198 pKa = 4.51EE199 pKa = 4.73EE200 pKa = 3.49IDD202 pKa = 4.79GFNFVDD208 pKa = 5.45DD209 pKa = 4.57GDD211 pKa = 3.7VDD213 pKa = 4.08FWGDD217 pKa = 2.63RR218 pKa = 11.84WLWHH222 pKa = 6.64EE223 pKa = 4.69DD224 pKa = 3.29DD225 pKa = 4.18VVVVQSYY232 pKa = 11.59SDD234 pKa = 3.94FGDD237 pKa = 3.56LDD239 pKa = 3.89GVEE242 pKa = 4.13TTNYY246 pKa = 9.88IMEE249 pKa = 4.53KK250 pKa = 9.98LVDD253 pKa = 3.65YY254 pKa = 10.83AMPSMIFNVEE264 pKa = 3.61AA265 pKa = 4.49

Molecular weight: 30.24 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2P4Y0M3|A0A2P4Y0M3_9STRA Uncharacterized protein OS=Phytophthora palmivora var. palmivora OX=611791 GN=PHPALM_12169 PE=3 SV=1
RR1 pKa = 6.07TTTTRR6 pKa = 11.84MVTSTPVVVTTTRR19 pKa = 11.84TVTRR23 pKa = 11.84RR24 pKa = 11.84TTTRR28 pKa = 11.84RR29 pKa = 11.84MTTRR33 pKa = 11.84KK34 pKa = 7.09MTTTTRR40 pKa = 11.84MAKK43 pKa = 10.58SMMTTTEE50 pKa = 3.77NMATNMMTSVAMSVPRR66 pKa = 11.84TRR68 pKa = 11.84RR69 pKa = 11.84TSPRR73 pKa = 11.84IVTTRR78 pKa = 11.84ATIARR83 pKa = 11.84TSTRR87 pKa = 11.84RR88 pKa = 11.84SICAAAATATPEE100 pKa = 3.94LVRR103 pKa = 11.84TSRR106 pKa = 11.84IVVVRR111 pKa = 11.84TAHH114 pKa = 4.86ITPRR118 pKa = 11.84RR119 pKa = 11.84AMFLRR124 pKa = 11.84PMDD127 pKa = 4.23LLKK130 pKa = 10.64LVHH133 pKa = 6.26LRR135 pKa = 11.84IPRR138 pKa = 11.84RR139 pKa = 11.84LMHH142 pKa = 6.61LRR144 pKa = 11.84TRR146 pKa = 11.84MRR148 pKa = 11.84PRR150 pKa = 11.84RR151 pKa = 11.84LMHH154 pKa = 6.25LRR156 pKa = 11.84ARR158 pKa = 11.84MRR160 pKa = 11.84PRR162 pKa = 11.84RR163 pKa = 11.84LVHH166 pKa = 6.58LRR168 pKa = 11.84APMQPRR174 pKa = 11.84RR175 pKa = 11.84LMRR178 pKa = 11.84LQTPMQLASRR188 pKa = 11.84MLRR191 pKa = 11.84NPRR194 pKa = 11.84SPLL197 pKa = 3.37

Molecular weight: 23.01 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

24468

0

24468

8206119

31

5703

335.4

37.44

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.374 ± 0.016

1.576 ± 0.008

5.875 ± 0.013

6.623 ± 0.021

3.708 ± 0.011

5.948 ± 0.015

2.419 ± 0.007

4.406 ± 0.012

5.475 ± 0.014

9.227 ± 0.019

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.548 ± 0.007

3.691 ± 0.009

4.727 ± 0.014

4.149 ± 0.012

6.264 ± 0.016

7.769 ± 0.018

6.0 ± 0.014

7.143 ± 0.012

1.302 ± 0.005

2.758 ± 0.01
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski