Streptococcus satellite phage Javan280

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae

Average proteome isoelectric point is 6.65

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 24 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4D5ZIW3|A0A4D5ZIW3_9VIRU Uncharacterized protein OS=Streptococcus satellite phage Javan280 OX=2558603 GN=JavanS280_0003 PE=4 SV=1
MM1 pKa = 7.26TNKK4 pKa = 10.03NNSFDD9 pKa = 4.16LANEE13 pKa = 3.81RR14 pKa = 11.84AKK16 pKa = 11.21NFGVWLEE23 pKa = 4.03EE24 pKa = 4.51AYY26 pKa = 8.85QTMLDD31 pKa = 4.09FSLEE35 pKa = 4.17NKK37 pKa = 9.58FDD39 pKa = 3.93CYY41 pKa = 10.78NAEE44 pKa = 4.0EE45 pKa = 4.19QKK47 pKa = 10.67QLEE50 pKa = 4.41QVLEE54 pKa = 4.12TLMDD58 pKa = 4.15FCDD61 pKa = 3.49MWEE64 pKa = 4.09KK65 pKa = 10.9GQIILVSEE73 pKa = 4.12EE74 pKa = 4.36RR75 pKa = 11.84EE76 pKa = 3.83MSKK79 pKa = 11.0

Molecular weight: 9.44 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4D5ZN24|A0A4D5ZN24_9VIRU Uncharacterized protein OS=Streptococcus satellite phage Javan280 OX=2558603 GN=JavanS280_0015 PE=4 SV=1
MM1 pKa = 7.28VFDD4 pKa = 4.0MRR6 pKa = 11.84QHH8 pKa = 6.19RR9 pKa = 11.84RR10 pKa = 11.84FLNFPTLGNLVVVDD24 pKa = 5.03DD25 pKa = 4.83LLSSEE30 pKa = 4.15RR31 pKa = 11.84TPRR34 pKa = 11.84KK35 pKa = 8.49YY36 pKa = 9.19TIKK39 pKa = 10.36II40 pKa = 3.53

Molecular weight: 4.81 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

24

0

24

3610

40

381

150.4

17.44

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.014 ± 0.343

0.72 ± 0.154

5.485 ± 0.422

7.839 ± 0.656

4.155 ± 0.298

4.294 ± 0.365

2.022 ± 0.311

8.421 ± 0.421

9.335 ± 0.458

10.471 ± 0.691

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.853 ± 0.274

5.485 ± 0.466

2.355 ± 0.243

4.571 ± 0.35

4.266 ± 0.385

6.122 ± 0.314

6.205 ± 0.452

4.986 ± 0.368

0.942 ± 0.185

4.46 ± 0.257
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski