Pepino mosaic virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Alphaflexiviridae; Potexvirus

Average proteome isoelectric point is 6.51

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q8JSN4|Q8JSN4_9VIRU ORF1 protein OS=Pepino mosaic virus OX=112229 PE=4 SV=1
MM1 pKa = 7.35EE2 pKa = 5.96RR3 pKa = 11.84STLINLLQLHH13 pKa = 6.18HH14 pKa = 6.95FEE16 pKa = 5.1PKK18 pKa = 10.42LSVEE22 pKa = 4.17GTIVVHH28 pKa = 6.84GIAGTGKK35 pKa = 7.05TTLLRR40 pKa = 11.84TLFSAYY46 pKa = 8.77PSLVIGSPRR55 pKa = 11.84PCYY58 pKa = 10.13LDD60 pKa = 3.3KK61 pKa = 11.07QNKK64 pKa = 8.56ISQVCLSCFPNTHH77 pKa = 6.59CDD79 pKa = 3.19IVDD82 pKa = 3.84EE83 pKa = 4.24YY84 pKa = 11.51HH85 pKa = 6.9LLEE88 pKa = 5.05SFLEE92 pKa = 4.15PKK94 pKa = 10.3LAIFGDD100 pKa = 4.36PCQCTYY106 pKa = 10.57IEE108 pKa = 4.43RR109 pKa = 11.84LRR111 pKa = 11.84VPHH114 pKa = 5.05YY115 pKa = 9.89TSFRR119 pKa = 11.84THH121 pKa = 7.07RR122 pKa = 11.84FGKK125 pKa = 8.37STAEE129 pKa = 3.82ILNKK133 pKa = 10.34LFDD136 pKa = 4.75LNIVSVKK143 pKa = 10.62KK144 pKa = 10.56EE145 pKa = 3.7DD146 pKa = 5.14DD147 pKa = 3.11IVEE150 pKa = 4.38FFNPFEE156 pKa = 4.28VDD158 pKa = 3.24PTEE161 pKa = 5.01HH162 pKa = 6.6ISASEE167 pKa = 4.16EE168 pKa = 3.87EE169 pKa = 4.43VLDD172 pKa = 4.17FVSDD176 pKa = 3.83QVVTTSSEE184 pKa = 3.87EE185 pKa = 3.84LAGLEE190 pKa = 4.07FAEE193 pKa = 4.59TTFYY197 pKa = 10.41CTTLAAAVAEE207 pKa = 4.45NPAKK211 pKa = 10.14TFISLTRR218 pKa = 11.84HH219 pKa = 3.93THH221 pKa = 5.71KK222 pKa = 10.47LTIGEE227 pKa = 4.14LNARR231 pKa = 11.84SNSS234 pKa = 3.46

Molecular weight: 26.27 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q8JSN2|Q8JSN2_9VIRU Movement protein TGBp3 OS=Pepino mosaic virus OX=112229 GN=TGBp3 PE=3 SV=1
MM1 pKa = 7.76PGLTPRR7 pKa = 11.84ADD9 pKa = 3.32LTDD12 pKa = 3.49TYY14 pKa = 10.87KK15 pKa = 10.66IIAIAFLLSACIYY28 pKa = 8.34FQNSHH33 pKa = 5.34YY34 pKa = 10.83QPVAGDD40 pKa = 3.55NLHH43 pKa = 6.77RR44 pKa = 11.84LPFGGQYY51 pKa = 10.32QDD53 pKa = 3.23GTKK56 pKa = 10.04KK57 pKa = 10.19ISYY60 pKa = 9.45FPQQQSYY67 pKa = 7.44FHH69 pKa = 6.99SGNKK73 pKa = 10.02LNVLILIFILTLGIVLTNKK92 pKa = 9.85FSFSFSRR99 pKa = 11.84TTHH102 pKa = 4.58QHH104 pKa = 3.95SCYY107 pKa = 8.65NTHH110 pKa = 6.59SATNNTQPLSGHH122 pKa = 6.13HH123 pKa = 6.13

Molecular weight: 13.88 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

2117

84

1439

423.4

47.66

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.314 ± 1.144

1.606 ± 0.251

4.818 ± 0.454

5.668 ± 0.879

5.102 ± 0.35

4.251 ± 0.334

3.637 ± 0.443

6.141 ± 0.492

6.046 ± 0.771

8.88 ± 0.589

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.031 ± 0.408

5.574 ± 0.367

5.243 ± 0.489

4.44 ± 0.571

3.826 ± 0.42

7.227 ± 0.79

7.227 ± 0.611

5.338 ± 0.346

0.897 ± 0.209

3.732 ± 0.446
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski