Lacrimispora algidixylanolytica

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Eubacteriales; Lachnospiraceae; Lacrimispora

Average proteome isoelectric point is 6.03

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4081 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A419T2V3|A0A419T2V3_9FIRM Glyco_hydro_18 domain-containing protein OS=Lacrimispora algidixylanolytica OX=94868 GN=BET01_19650 PE=4 SV=1
MM1 pKa = 7.37QDD3 pKa = 3.37YY4 pKa = 10.29FPVVVQVIPLDD15 pKa = 3.84NYY17 pKa = 9.3HH18 pKa = 5.84VQVFFDD24 pKa = 3.15NGKK27 pKa = 9.31IVEE30 pKa = 4.25YY31 pKa = 10.32DD32 pKa = 3.34ASSLLQGEE40 pKa = 4.62VFKK43 pKa = 10.46PLQDD47 pKa = 3.05IQVFKK52 pKa = 10.14DD53 pKa = 3.06TCTVLNDD60 pKa = 3.45TLAWDD65 pKa = 3.63ISGDD69 pKa = 3.56RR70 pKa = 11.84SLSEE74 pKa = 5.71CIDD77 pKa = 4.11LDD79 pKa = 3.64PFMLYY84 pKa = 10.03EE85 pKa = 4.35LEE87 pKa = 4.77SINHH91 pKa = 7.08LIAA94 pKa = 5.54

Molecular weight: 10.79 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A419TCY5|A0A419TCY5_9FIRM Ribosomal RNA small subunit methyltransferase G OS=Lacrimispora algidixylanolytica OX=94868 GN=rsmG PE=3 SV=1
MM1 pKa = 7.67KK2 pKa = 8.72MTFQPKK8 pKa = 8.95KK9 pKa = 7.58RR10 pKa = 11.84QRR12 pKa = 11.84SKK14 pKa = 9.17VHH16 pKa = 5.89GFRR19 pKa = 11.84ARR21 pKa = 11.84MSTPGGRR28 pKa = 11.84KK29 pKa = 8.8VLAARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.33GRR39 pKa = 11.84AKK41 pKa = 10.69LSAA44 pKa = 3.92

Molecular weight: 4.98 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4081

0

4081

1335621

29

5189

327.3

36.69

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.76 ± 0.04

1.34 ± 0.016

5.444 ± 0.025

7.282 ± 0.041

4.306 ± 0.032

7.25 ± 0.044

1.755 ± 0.016

7.781 ± 0.041

6.959 ± 0.032

9.28 ± 0.035

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.079 ± 0.021

4.604 ± 0.03

3.369 ± 0.026

3.157 ± 0.021

3.995 ± 0.026

6.414 ± 0.028

5.475 ± 0.031

6.663 ± 0.029

0.96 ± 0.014

4.13 ± 0.031
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski