Croceitalea dokdonensis DOKDO 023

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Croceitalea; Croceitalea dokdonensis

Average proteome isoelectric point is 6.78

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3682 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0P7AD04|A0A0P7AD04_9FLAO 3'-5' exonuclease OS=Croceitalea dokdonensis DOKDO 023 OX=1300341 GN=I595_3051 PE=4 SV=1
MM1 pKa = 7.74LMPMVLRR8 pKa = 11.84FFAVISVFLLLSCGGDD24 pKa = 3.7DD25 pKa = 4.12EE26 pKa = 5.72PEE28 pKa = 4.05NQMTTSVTVAFLAQEE43 pKa = 4.44TTGSEE48 pKa = 3.88ALGNNLPSVSVRR60 pKa = 11.84GTVASEE66 pKa = 4.07VSVSVLLTNTGTATLGEE83 pKa = 4.69DD84 pKa = 3.98FSFASPTVISIPIGNYY100 pKa = 10.23DD101 pKa = 3.6GTALTAIPLPGLSILDD117 pKa = 3.66DD118 pKa = 3.78TVQEE122 pKa = 4.21GFEE125 pKa = 4.3TIIFSLDD132 pKa = 3.26NPTEE136 pKa = 4.2GVNLGDD142 pKa = 3.91VATTTYY148 pKa = 10.02TINDD152 pKa = 4.14DD153 pKa = 3.46EE154 pKa = 4.59TVQVGFSQAMASDD167 pKa = 4.1RR168 pKa = 11.84EE169 pKa = 4.39NVGGNLPTLFVTGTLSEE186 pKa = 4.88DD187 pKa = 3.11KK188 pKa = 10.49TITLTAVDD196 pKa = 4.59SGDD199 pKa = 3.3ATLGQDD205 pKa = 3.7YY206 pKa = 10.73NVASPLVVTIPAGTYY221 pKa = 10.54DD222 pKa = 3.78GTTATALTIPALAIIDD238 pKa = 3.75DD239 pKa = 4.3TVPEE243 pKa = 4.04EE244 pKa = 4.38SEE246 pKa = 4.48SFEE249 pKa = 4.41LTLSDD254 pKa = 4.3PSNGLLLNEE263 pKa = 5.53LDD265 pKa = 3.11RR266 pKa = 11.84TMYY269 pKa = 9.87TIEE272 pKa = 4.28GVAPCEE278 pKa = 3.83NGRR281 pKa = 11.84ANGFPCNGFDD291 pKa = 3.51LLARR295 pKa = 11.84MEE297 pKa = 4.56HH298 pKa = 5.88STFSSTQGNDD308 pKa = 2.03IWGWTDD314 pKa = 2.76TATGHH319 pKa = 6.31EE320 pKa = 4.43YY321 pKa = 11.41ALVALNNGTAFVDD334 pKa = 3.75ITADD338 pKa = 3.53DD339 pKa = 3.88PVYY342 pKa = 10.65LGKK345 pKa = 10.66LPSATGSSVWRR356 pKa = 11.84DD357 pKa = 3.0VKK359 pKa = 10.8IYY361 pKa = 10.63GNHH364 pKa = 6.38AYY366 pKa = 9.27IVSEE370 pKa = 4.01ASGHH374 pKa = 4.89GMQVFDD380 pKa = 4.03LTRR383 pKa = 11.84LRR385 pKa = 11.84NVANPPTDD393 pKa = 3.66FTQDD397 pKa = 2.62ARR399 pKa = 11.84YY400 pKa = 7.96TDD402 pKa = 3.22IGNAHH407 pKa = 5.85NVVINEE413 pKa = 4.15QNGFAYY419 pKa = 9.56PVGTARR425 pKa = 11.84NDD427 pKa = 3.55TFNGGVHH434 pKa = 6.47FVDD437 pKa = 3.65IQNPTSPTAAGGYY450 pKa = 9.4GDD452 pKa = 4.67NGYY455 pKa = 7.73THH457 pKa = 7.89DD458 pKa = 4.1AQVVNYY464 pKa = 7.53EE465 pKa = 4.58GPDD468 pKa = 3.02ADD470 pKa = 3.79YY471 pKa = 10.26TGRR474 pKa = 11.84EE475 pKa = 3.78IFIGANEE482 pKa = 4.01DD483 pKa = 3.19QIAIVDD489 pKa = 3.81ITDD492 pKa = 3.47KK493 pKa = 11.48ANPTEE498 pKa = 4.22IATITYY504 pKa = 9.87GNLGYY509 pKa = 7.89THH511 pKa = 6.47QGWFTEE517 pKa = 4.08DD518 pKa = 2.99QRR520 pKa = 11.84FFLLGDD526 pKa = 3.76EE527 pKa = 4.73LDD529 pKa = 4.53EE530 pKa = 5.86IDD532 pKa = 4.86FGFNSRR538 pKa = 11.84TLVFDD543 pKa = 5.01LQDD546 pKa = 3.54LDD548 pKa = 4.28NPVLHH553 pKa = 5.73TTYY556 pKa = 10.66LGPTAAIDD564 pKa = 3.48HH565 pKa = 6.55NGYY568 pKa = 9.22VHH570 pKa = 7.32GDD572 pKa = 3.37EE573 pKa = 5.46FFLANYY579 pKa = 6.66TAGVRR584 pKa = 11.84VLDD587 pKa = 4.27LSDD590 pKa = 3.65IEE592 pKa = 4.76GGNLTEE598 pKa = 5.23IGFFDD603 pKa = 4.21TFPDD607 pKa = 3.33NDD609 pKa = 3.37VASFNGVWSVYY620 pKa = 10.4PYY622 pKa = 10.59FEE624 pKa = 4.12SGKK627 pKa = 10.47IIVNDD632 pKa = 3.37SDD634 pKa = 3.46TGFFIIQKK642 pKa = 8.69SQQ644 pKa = 2.6

Molecular weight: 69.09 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0P7B2B5|A0A0P7B2B5_9FLAO Uncharacterized protein OS=Croceitalea dokdonensis DOKDO 023 OX=1300341 GN=I595_1994 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.59RR3 pKa = 11.84TFQPSKK9 pKa = 9.13RR10 pKa = 11.84KK11 pKa = 9.48RR12 pKa = 11.84RR13 pKa = 11.84NKK15 pKa = 9.49HH16 pKa = 3.94GFRR19 pKa = 11.84EE20 pKa = 4.27RR21 pKa = 11.84MASANGRR28 pKa = 11.84KK29 pKa = 9.04VLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.08GRR39 pKa = 11.84KK40 pKa = 8.3KK41 pKa = 9.83LTVSSEE47 pKa = 3.9PRR49 pKa = 11.84HH50 pKa = 5.77KK51 pKa = 10.61KK52 pKa = 9.84

Molecular weight: 6.24 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3682

0

3682

1160232

37

4185

315.1

35.41

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.12 ± 0.039

0.753 ± 0.014

5.604 ± 0.047

6.296 ± 0.039

5.225 ± 0.038

6.921 ± 0.041

1.897 ± 0.024

6.952 ± 0.033

7.094 ± 0.069

9.673 ± 0.051

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.338 ± 0.022

5.572 ± 0.052

3.686 ± 0.028

3.744 ± 0.023

3.854 ± 0.03

5.933 ± 0.033

5.898 ± 0.057

6.446 ± 0.031

1.143 ± 0.016

3.85 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski