Bos taurus papillomavirus 13

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Deltapapillomavirus; Deltapapillomavirus 4

Average proteome isoelectric point is 6.69

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|J9V4T2|J9V4T2_BPV1 Protein E6 OS=Bos taurus papillomavirus 13 OX=1887213 GN=E6 PE=3 SV=1
MM1 pKa = 7.49PNLWFLLFLGLVAAMQLLLLLFLLLFFLVYY31 pKa = 9.32WDD33 pKa = 5.61HH34 pKa = 7.17FDD36 pKa = 4.07CSCTGLPFF44 pKa = 4.63

Molecular weight: 5.2 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|J9V8D6|J9V8D6_BPV1 Protein E7 OS=Bos taurus papillomavirus 13 OX=1887213 GN=E7 PE=3 SV=1
MM1 pKa = 7.21LVSHH5 pKa = 7.33PPLLILEE12 pKa = 4.73IAQTEE17 pKa = 4.58SGSHH21 pKa = 4.82QKK23 pKa = 10.32DD24 pKa = 3.33LKK26 pKa = 10.22EE27 pKa = 3.93TLQEE31 pKa = 4.37KK32 pKa = 10.44KK33 pKa = 10.02PSQPSLSLLCSAPPPAVPSEE53 pKa = 4.08QASVGYY59 pKa = 8.37GTVLARR65 pKa = 11.84TPTIFLQARR74 pKa = 11.84GALFSALPPPRR85 pKa = 11.84CRR87 pKa = 11.84ARR89 pKa = 11.84YY90 pKa = 8.6RR91 pKa = 11.84WTWHH95 pKa = 4.93QGRR98 pKa = 11.84KK99 pKa = 8.84KK100 pKa = 10.52KK101 pKa = 8.97KK102 pKa = 7.05TNRR105 pKa = 11.84PTPQRR110 pKa = 11.84RR111 pKa = 11.84NLL113 pKa = 3.44

Molecular weight: 12.65 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

2406

44

606

300.8

33.33

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.855 ± 0.55

2.494 ± 0.635

5.278 ± 0.377

5.985 ± 0.535

4.073 ± 0.557

7.481 ± 0.787

2.411 ± 0.182

3.699 ± 0.718

5.362 ± 0.84

9.767 ± 0.889

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.33 ± 0.22

3.533 ± 0.53

6.151 ± 1.109

4.115 ± 0.471

5.943 ± 0.537

7.689 ± 0.611

6.65 ± 0.554

5.569 ± 0.334

1.496 ± 0.242

3.117 ± 0.271
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski