Caviibacterium pharyngocola

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Caviibacterium

Average proteome isoelectric point is 6.51

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2334 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2M8RTR8|A0A2M8RTR8_9PAST 30S ribosomal protein S5 OS=Caviibacterium pharyngocola OX=28159 GN=rpsE PE=3 SV=1
MM1 pKa = 7.65AIVGLFYY8 pKa = 11.01GSDD11 pKa = 3.18TGNTEE16 pKa = 3.78NVAKK20 pKa = 10.15MIQKK24 pKa = 9.57QLGAEE29 pKa = 4.06LVDD32 pKa = 3.37IRR34 pKa = 11.84DD35 pKa = 3.49IAKK38 pKa = 8.47STKK41 pKa = 9.86EE42 pKa = 4.18DD43 pKa = 3.05IEE45 pKa = 5.8AYY47 pKa = 10.09DD48 pKa = 3.9FLMFGIPTWYY58 pKa = 10.25YY59 pKa = 11.58GEE61 pKa = 4.69AQCDD65 pKa = 3.26WDD67 pKa = 5.24DD68 pKa = 4.13FFPTLEE74 pKa = 4.64QIDD77 pKa = 4.09FTDD80 pKa = 3.2KK81 pKa = 10.68LVAIFGCGDD90 pKa = 3.25QEE92 pKa = 5.04DD93 pKa = 4.3YY94 pKa = 11.79AEE96 pKa = 4.32YY97 pKa = 10.5FCDD100 pKa = 4.34AMGTVRR106 pKa = 11.84NIIEE110 pKa = 4.26PKK112 pKa = 9.82GAIIVGNWSTEE123 pKa = 3.52GYY125 pKa = 8.71TFEE128 pKa = 4.7SSQALVDD135 pKa = 3.73EE136 pKa = 4.44NTFVGLCIDD145 pKa = 4.19EE146 pKa = 4.82DD147 pKa = 3.98RR148 pKa = 11.84QPEE151 pKa = 4.27LTGEE155 pKa = 4.25RR156 pKa = 11.84VEE158 pKa = 4.37KK159 pKa = 8.58WTKK162 pKa = 8.92QVYY165 pKa = 10.69DD166 pKa = 4.11EE167 pKa = 4.44MCLAEE172 pKa = 4.39LAA174 pKa = 4.24

Molecular weight: 19.71 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2M8RYH0|A0A2M8RYH0_9PAST Uncharacterized protein OS=Caviibacterium pharyngocola OX=28159 GN=CVP04_02260 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.6RR12 pKa = 11.84SRR14 pKa = 11.84THH16 pKa = 6.4GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4NGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.15GRR39 pKa = 11.84KK40 pKa = 8.87SLSAA44 pKa = 3.86

Molecular weight: 5.1 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2334

0

2334

729501

30

2655

312.6

34.88

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.84 ± 0.071

1.093 ± 0.019

5.11 ± 0.034

6.245 ± 0.046

4.409 ± 0.039

6.736 ± 0.053

1.989 ± 0.025

6.873 ± 0.046

5.903 ± 0.042

10.588 ± 0.063

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.317 ± 0.026

4.736 ± 0.042

3.734 ± 0.034

4.849 ± 0.044

4.711 ± 0.039

5.666 ± 0.037

5.269 ± 0.042

6.569 ± 0.045

1.157 ± 0.021

3.206 ± 0.034
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski