Macaca fascicularis papillomavirus 3b

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 12

Average proteome isoelectric point is 6.51

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|C3PUJ6|C3PUJ6_RHPV1 Replication protein E1 OS=Macaca fascicularis papillomavirus 3b OX=464936 GN=E1 PE=3 SV=1
MM1 pKa = 7.64IGPGPTLQDD10 pKa = 2.48IVLEE14 pKa = 4.34LEE16 pKa = 4.41PEE18 pKa = 4.28PVDD21 pKa = 3.87LRR23 pKa = 11.84CYY25 pKa = 9.36EE26 pKa = 4.05QLDD29 pKa = 3.76SSEE32 pKa = 5.23DD33 pKa = 3.54EE34 pKa = 5.15DD35 pKa = 6.02EE36 pKa = 4.73IDD38 pKa = 4.01HH39 pKa = 6.59HH40 pKa = 5.5QQQDD44 pKa = 3.45RR45 pKa = 11.84PDD47 pKa = 3.64GQEE50 pKa = 3.75DD51 pKa = 3.28DD52 pKa = 4.19GEE54 pKa = 4.32RR55 pKa = 11.84FRR57 pKa = 11.84ILSDD61 pKa = 3.13CHH63 pKa = 6.41VCQNTVSLVVHH74 pKa = 5.86STHH77 pKa = 7.69DD78 pKa = 3.72DD79 pKa = 3.43LHH81 pKa = 8.04ILEE84 pKa = 5.19DD85 pKa = 3.96LLMGTLEE92 pKa = 4.25IVCPNCAVV100 pKa = 3.11

Molecular weight: 11.32 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|C3PUJ9|C3PUJ9_RHPV1 Probable protein E5 (Fragment) OS=Macaca fascicularis papillomavirus 3b OX=464936 GN=E5 PE=3 SV=1
YYY2 pKa = 9.4HH3 pKa = 7.05PNLCLALPSARR14 pKa = 11.84EEE16 pKa = 3.86YY17 pKa = 10.79LLKKK21 pKa = 10.75LTDDD25 pKa = 4.24SRR27 pKa = 11.84PPSPPTPTPLPRR39 pKa = 11.84KKK41 pKa = 7.75RR42 pKa = 11.84GSAHHH47 pKa = 5.47RR48 pKa = 11.84QPKKK52 pKa = 9.69ADDD55 pKa = 3.05QTPEEE60 pKa = 4.43TPCGPWTLTAEEE72 pKa = 4.43HH73 pKa = 7.12CLEEE77 pKa = 4.22HHH79 pKa = 6.5KKK81 pKa = 8.82PQGTVTVTVRR91 pKa = 11.84L

Molecular weight: 10.02 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

2383

86

627

297.9

33.24

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.588 ± 0.501

3.021 ± 0.754

5.959 ± 0.506

5.455 ± 0.767

3.567 ± 0.554

6.714 ± 0.626

2.937 ± 0.388

3.945 ± 0.442

4.784 ± 0.783

8.98 ± 1.142

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.762 ± 0.278

3.189 ± 0.556

6.546 ± 1.316

4.448 ± 0.418

5.539 ± 0.593

6.882 ± 0.659

6.924 ± 0.784

7.595 ± 0.475

1.553 ± 0.289

3.609 ± 0.396
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski