Armatimonadetes bacterium Uphvl-Ar1

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Armatimonadetes; unclassified Armatimonadetes

Average proteome isoelectric point is 6.23

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3008 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1Y0GWU2|A0A1Y0GWU2_9BACT Uncharacterized protein OS=Armatimonadetes bacterium Uphvl-Ar1 OX=2004467 GN=CCB80_03225 PE=4 SV=1
MM1 pKa = 7.8TDD3 pKa = 3.23QEE5 pKa = 5.03HH6 pKa = 6.42YY7 pKa = 10.99LPDD10 pKa = 3.91GLVDD14 pKa = 4.94LEE16 pKa = 5.13PGDD19 pKa = 3.86ILCWDD24 pKa = 4.62LQPEE28 pKa = 4.15PGEE31 pKa = 4.3YY32 pKa = 10.64YY33 pKa = 10.81LVATSKK39 pKa = 10.68FDD41 pKa = 4.69AIVSEE46 pKa = 4.14LLGAKK51 pKa = 9.54KK52 pKa = 10.31ALADD56 pKa = 3.59AVEE59 pKa = 4.85LGFSSIDD66 pKa = 3.15AMQAIWDD73 pKa = 4.02SDD75 pKa = 4.34SEE77 pKa = 4.48VQACGAGATAMPEE90 pKa = 3.98LYY92 pKa = 10.41NYY94 pKa = 10.55LNHH97 pKa = 6.28QRR99 pKa = 11.84FDD101 pKa = 3.82HH102 pKa = 7.14VDD104 pKa = 3.3GQQPSDD110 pKa = 3.71QPVKK114 pKa = 10.53EE115 pKa = 4.45SPQEE119 pKa = 3.83EE120 pKa = 4.48ASS122 pKa = 3.49

Molecular weight: 13.37 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1Y0H4I5|A0A1Y0H4I5_9BACT Uncharacterized protein OS=Armatimonadetes bacterium Uphvl-Ar1 OX=2004467 GN=CCB80_13425 PE=4 SV=1
MM1 pKa = 7.44KK2 pKa = 9.6RR3 pKa = 11.84TFQPNNRR10 pKa = 11.84KK11 pKa = 8.16RR12 pKa = 11.84HH13 pKa = 5.28KK14 pKa = 9.84KK15 pKa = 8.68HH16 pKa = 5.29GFRR19 pKa = 11.84VRR21 pKa = 11.84MRR23 pKa = 11.84TNDD26 pKa = 3.23GQNVLKK32 pKa = 10.57RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84TKK37 pKa = 10.18GRR39 pKa = 11.84HH40 pKa = 4.68RR41 pKa = 11.84LGAA44 pKa = 3.91

Molecular weight: 5.43 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3008

0

3008

893138

36

2344

296.9

32.63

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.173 ± 0.046

0.889 ± 0.015

5.392 ± 0.032

6.346 ± 0.048

4.17 ± 0.03

8.366 ± 0.048

1.853 ± 0.021

5.765 ± 0.034

4.483 ± 0.039

9.412 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.521 ± 0.023

3.715 ± 0.035

4.895 ± 0.038

3.716 ± 0.028

5.73 ± 0.04

6.408 ± 0.038

5.785 ± 0.043

7.386 ± 0.042

1.465 ± 0.022

2.53 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski