Salmonella phage vB_SalS_SA001

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Demerecviridae; Markadamsvirinae; Tequintavirus; unclassified Tequintavirus

Average proteome isoelectric point is 6.47

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 157 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A7D3QJ49|A0A7D3QJ49_9CAUD Uncharacterized protein OS=Salmonella phage vB_SalS_SA001 OX=2739751 GN=ACSA001_0650 PE=4 SV=1
MM1 pKa = 7.38SNKK4 pKa = 9.58IVVTKK9 pKa = 10.11ISTMVDD15 pKa = 2.72VFYY18 pKa = 11.54VPDD21 pKa = 3.75TPEE24 pKa = 3.29NRR26 pKa = 11.84QAVEE30 pKa = 3.63RR31 pKa = 11.84GEE33 pKa = 4.26YY34 pKa = 10.66DD35 pKa = 3.62SVIYY39 pKa = 10.64DD40 pKa = 3.26ADD42 pKa = 3.57GYY44 pKa = 9.51YY45 pKa = 10.25QYY47 pKa = 11.53LVDD50 pKa = 5.15SYY52 pKa = 11.94GEE54 pKa = 4.12EE55 pKa = 3.88EE56 pKa = 5.01KK57 pKa = 9.68ITHH60 pKa = 7.11RR61 pKa = 11.84LPDD64 pKa = 3.26

Molecular weight: 7.45 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A7D3QJJ8|A0A7D3QJJ8_9CAUD Uncharacterized protein OS=Salmonella phage vB_SalS_SA001 OX=2739751 GN=ACSA001_1460 PE=4 SV=1
MM1 pKa = 7.62LRR3 pKa = 11.84TLNRR7 pKa = 11.84KK8 pKa = 8.68LLFLLEE14 pKa = 4.18LLKK17 pKa = 10.32PLPLSPLHH25 pKa = 6.66LLLNLLHH32 pKa = 6.3QLLNRR37 pKa = 11.84RR38 pKa = 11.84NQQLQLKK45 pKa = 7.64YY46 pKa = 10.54LRR48 pKa = 11.84LMLKK52 pKa = 9.85LAKK55 pKa = 9.58IRR57 pKa = 11.84QRR59 pKa = 11.84LVKK62 pKa = 10.51LMQKK66 pKa = 10.19LVRR69 pKa = 11.84LTQKK73 pKa = 10.43LVRR76 pKa = 11.84LMQRR80 pKa = 11.84LAKK83 pKa = 9.8IRR85 pKa = 11.84QRR87 pKa = 11.84LVKK90 pKa = 10.7LMLLLLLLQQRR101 pKa = 11.84LVKK104 pKa = 10.16IRR106 pKa = 11.84QRR108 pKa = 11.84LVKK111 pKa = 10.7LMLLLLLRR119 pKa = 11.84ILKK122 pKa = 10.07AIEE125 pKa = 3.88MGQKK129 pKa = 10.33YY130 pKa = 10.14SLHH133 pKa = 6.49KK134 pKa = 10.16PPHH137 pKa = 4.59QHH139 pKa = 7.14PLQKK143 pKa = 9.76PRR145 pKa = 11.84KK146 pKa = 8.78LMQKK150 pKa = 9.73LVKK153 pKa = 10.17PMQKK157 pKa = 9.9LVKK160 pKa = 9.94PMQKK164 pKa = 9.93LVRR167 pKa = 11.84LMQPIPQPQLTNQQ180 pKa = 3.14

Molecular weight: 21.72 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

157

0

157

30683

32

1226

195.4

22.08

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.252 ± 0.375

1.137 ± 0.102

6.108 ± 0.163

7.007 ± 0.216

4.142 ± 0.147

6.284 ± 0.236

1.949 ± 0.122

6.799 ± 0.165

7.346 ± 0.219

8.673 ± 0.292

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.669 ± 0.131

5.234 ± 0.201

3.539 ± 0.127

3.738 ± 0.189

4.68 ± 0.134

6.297 ± 0.199

5.547 ± 0.156

6.407 ± 0.151

1.229 ± 0.086

3.963 ± 0.149
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski