Prochlorococcus phage P-SSP10

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Tangaroavirus; Prochlorococcus virus PSSP10

Average proteome isoelectric point is 5.96

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 49 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|M1U3M4|M1U3M4_9CAUD Uncharacterized protein OS=Prochlorococcus phage P-SSP10 OX=885867 GN=PROG_00017 PE=4 SV=1
MM1 pKa = 7.75AGPYY5 pKa = 10.66VNVEE9 pKa = 3.89TNANYY14 pKa = 9.36TGSDD18 pKa = 3.57YY19 pKa = 11.1TSRR22 pKa = 11.84ATDD25 pKa = 2.97LHH27 pKa = 7.68IGYY30 pKa = 9.8EE31 pKa = 4.09NEE33 pKa = 4.27LGSLAYY39 pKa = 9.89YY40 pKa = 9.15VQGGKK45 pKa = 8.35TINAADD51 pKa = 4.03GVDD54 pKa = 3.72SEE56 pKa = 5.85SNFSGKK62 pKa = 10.51LGGNISATDD71 pKa = 3.41KK72 pKa = 10.96LGLYY76 pKa = 10.58GEE78 pKa = 4.7VSFSQVEE85 pKa = 4.29DD86 pKa = 3.61ADD88 pKa = 3.71NTYY91 pKa = 8.69GTKK94 pKa = 10.52LGAKK98 pKa = 9.94YY99 pKa = 10.77SFF101 pKa = 4.04

Molecular weight: 10.68 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|M1U3P4|M1U3P4_9CAUD Uncharacterized protein OS=Prochlorococcus phage P-SSP10 OX=885867 GN=PROG_00050 PE=4 SV=1
MM1 pKa = 7.57APKK4 pKa = 10.32KK5 pKa = 10.8LPLSKK10 pKa = 10.36LKK12 pKa = 10.69KK13 pKa = 8.83SARR16 pKa = 11.84NYY18 pKa = 10.25RR19 pKa = 11.84KK20 pKa = 9.55NPLSRR25 pKa = 11.84EE26 pKa = 4.27HH27 pKa = 6.92KK28 pKa = 10.34NSEE31 pKa = 3.54QRR33 pKa = 11.84KK34 pKa = 8.63RR35 pKa = 11.84NKK37 pKa = 10.33LKK39 pKa = 10.46INKK42 pKa = 9.45KK43 pKa = 9.83YY44 pKa = 10.21RR45 pKa = 11.84AEE47 pKa = 4.07LNSARR52 pKa = 11.84RR53 pKa = 11.84KK54 pKa = 9.93DD55 pKa = 3.56GNYY58 pKa = 10.37GKK60 pKa = 10.66GGKK63 pKa = 9.68DD64 pKa = 3.2YY65 pKa = 11.44SHH67 pKa = 7.1TKK69 pKa = 10.04RR70 pKa = 11.84GTLVRR75 pKa = 11.84EE76 pKa = 4.14DD77 pKa = 3.41ASKK80 pKa = 10.82NRR82 pKa = 11.84ARR84 pKa = 11.84NRR86 pKa = 11.84SKK88 pKa = 10.92KK89 pKa = 10.27

Molecular weight: 10.47 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

49

0

49

13676

49

1363

279.1

30.96

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.716 ± 0.445

0.899 ± 0.167

6.617 ± 0.295

6.171 ± 0.35

3.627 ± 0.179

7.349 ± 0.46

1.784 ± 0.163

5.462 ± 0.226

6.53 ± 0.446

7.817 ± 0.374

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.325 ± 0.224

6.003 ± 0.385

3.795 ± 0.301

3.985 ± 0.258

4.27 ± 0.239

6.581 ± 0.328

6.778 ± 0.488

6.12 ± 0.262

1.44 ± 0.145

3.729 ± 0.251
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski