Sida yellow vein virus satellite DNA beta

Taxonomy: Viruses; Tolecusatellitidae; Betasatellite; unclassified Betasatellite

Average proteome isoelectric point is 9.33

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q4GZI2|Q4GZI2_9VIRU C1 protein OS=Sida yellow vein virus satellite DNA beta OX=326489 GN=c1 PE=4 SV=1
MM1 pKa = 7.12TIKK4 pKa = 10.61YY5 pKa = 9.66KK6 pKa = 10.38NRR8 pKa = 11.84KK9 pKa = 7.92GLEE12 pKa = 4.19FIIDD16 pKa = 3.68VQVEE20 pKa = 4.12GGRR23 pKa = 11.84FYY25 pKa = 10.96RR26 pKa = 11.84SSAEE30 pKa = 3.61AVLQHH35 pKa = 5.78GHH37 pKa = 6.46KK38 pKa = 9.59CCQGGTSSIPIRR50 pKa = 11.84IRR52 pKa = 11.84KK53 pKa = 6.24GHH55 pKa = 6.02RR56 pKa = 11.84AVRR59 pKa = 11.84LQFLGGGDD67 pKa = 3.59KK68 pKa = 10.66EE69 pKa = 4.65HH70 pKa = 6.99IRR72 pKa = 11.84HH73 pKa = 5.84HH74 pKa = 6.15VPGNRR79 pKa = 11.84LSTEE83 pKa = 3.9FQAGGRR89 pKa = 11.84GGGNRR94 pKa = 11.84YY95 pKa = 8.67PHH97 pKa = 7.29DD98 pKa = 3.89PRR100 pKa = 11.84GKK102 pKa = 8.84GRR104 pKa = 11.84GYY106 pKa = 10.33RR107 pKa = 11.84PCNRR111 pKa = 11.84IRR113 pKa = 11.84CIYY116 pKa = 10.35ALIRR120 pKa = 11.84ISAA123 pKa = 3.71

Molecular weight: 13.81 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q4GZI2|Q4GZI2_9VIRU C1 protein OS=Sida yellow vein virus satellite DNA beta OX=326489 GN=c1 PE=4 SV=1
MM1 pKa = 7.12TIKK4 pKa = 10.61YY5 pKa = 9.66KK6 pKa = 10.38NRR8 pKa = 11.84KK9 pKa = 7.92GLEE12 pKa = 4.19FIIDD16 pKa = 3.68VQVEE20 pKa = 4.12GGRR23 pKa = 11.84FYY25 pKa = 10.96RR26 pKa = 11.84SSAEE30 pKa = 3.61AVLQHH35 pKa = 5.78GHH37 pKa = 6.46KK38 pKa = 9.59CCQGGTSSIPIRR50 pKa = 11.84IRR52 pKa = 11.84KK53 pKa = 6.24GHH55 pKa = 6.02RR56 pKa = 11.84AVRR59 pKa = 11.84LQFLGGGDD67 pKa = 3.59KK68 pKa = 10.66EE69 pKa = 4.65HH70 pKa = 6.99IRR72 pKa = 11.84HH73 pKa = 5.84HH74 pKa = 6.15VPGNRR79 pKa = 11.84LSTEE83 pKa = 3.9FQAGGRR89 pKa = 11.84GGGNRR94 pKa = 11.84YY95 pKa = 8.67PHH97 pKa = 7.29DD98 pKa = 3.89PRR100 pKa = 11.84GKK102 pKa = 8.84GRR104 pKa = 11.84GYY106 pKa = 10.33RR107 pKa = 11.84PCNRR111 pKa = 11.84IRR113 pKa = 11.84CIYY116 pKa = 10.35ALIRR120 pKa = 11.84ISAA123 pKa = 3.71

Molecular weight: 13.81 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

123

123

123

123.0

13.81

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.878 ± 0.0

3.252 ± 0.0

2.439 ± 0.0

4.065 ± 0.0

3.252 ± 0.0

15.447 ± 0.0

5.691 ± 0.0

8.943 ± 0.0

5.691 ± 0.0

4.878 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

0.813 ± 0.0

3.252 ± 0.0

4.065 ± 0.0

4.065 ± 0.0

13.821 ± 0.0

4.878 ± 0.0

2.439 ± 0.0

4.065 ± 0.0

0.0 ± 0.0

4.065 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski