Deinococcus sp. HMF7620

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus; unclassified Deinococcus

Average proteome isoelectric point is 6.75

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4347 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A7C9HU66|A0A7C9HU66_9DEIO Phospholipase OS=Deinococcus sp. HMF7620 OX=2682977 GN=GO986_20555 PE=4 SV=1
MM1 pKa = 7.27SRR3 pKa = 11.84LSVRR7 pKa = 11.84LLCTVVGLSLLSSALAVGTPVNTSISNTATLNYY40 pKa = 9.69RR41 pKa = 11.84DD42 pKa = 4.47ALNAPRR48 pKa = 11.84TQTSNPVTVTVRR60 pKa = 11.84QVYY63 pKa = 10.07ALSLTPDD70 pKa = 3.46AAEE73 pKa = 3.88NAIPLSRR80 pKa = 11.84QFSAQAGASRR90 pKa = 11.84LIGYY94 pKa = 7.4EE95 pKa = 3.93LVNAGNGPDD104 pKa = 3.71TLTLGVTQSATDD116 pKa = 3.73GFDD119 pKa = 2.85VTTRR123 pKa = 11.84LLPDD127 pKa = 4.29ANCDD131 pKa = 3.46GTVDD135 pKa = 3.66SAVPLGAAQTLAADD149 pKa = 3.95EE150 pKa = 4.36RR151 pKa = 11.84LCVYY155 pKa = 10.53VEE157 pKa = 3.97ATVPAGAPTGAAARR171 pKa = 11.84LTLTAASQGNPAVTDD186 pKa = 3.68TEE188 pKa = 4.79NYY190 pKa = 9.9AQVTVSAAGQLDD202 pKa = 3.38ITKK205 pKa = 8.65TVSPTGSALPGAPLTYY221 pKa = 9.1TVSGSVPAGNPVGAVSGVLTVDD243 pKa = 3.93GVPRR247 pKa = 11.84SGVLVRR253 pKa = 11.84DD254 pKa = 3.59VLTTLEE260 pKa = 4.37FGAVTAASASSGAATALYY278 pKa = 8.97STDD281 pKa = 5.22GGATWTAAVPASGVNAVALLVEE303 pKa = 4.53GTGAFLPAGSTLTLSFTASIPAGTLAGTVVRR334 pKa = 11.84NSAAATLDD342 pKa = 3.58GNGDD346 pKa = 3.62GDD348 pKa = 3.92GTDD351 pKa = 3.41PGEE354 pKa = 4.41TPVTPDD360 pKa = 2.61TTTTVGTVVGAAVGPAAFPQGGASGSYY387 pKa = 7.27TLRR390 pKa = 11.84GTAIDD395 pKa = 3.95RR396 pKa = 11.84SGDD399 pKa = 3.59TQTTTTPVTAGGNVTFRR416 pKa = 11.84QTVLNTGNASNDD428 pKa = 2.94FTLAVAGAPSGWTCTVQSISSSDD451 pKa = 3.52TLGTLTNPVTLSAGQSLDD469 pKa = 3.56FAVDD473 pKa = 3.27CALPYY478 pKa = 10.39GAAGTTNVVLTVSATPAGGSADD500 pKa = 3.66TTTSTVAQVSAAGAPLLGNGDD521 pKa = 4.83LNPATAPSQAGVTVATNPGTTASFPLEE548 pKa = 4.07LQNNGPVAEE557 pKa = 4.61TYY559 pKa = 9.57TLSSTLTGTQLYY571 pKa = 10.86ADD573 pKa = 4.47TNCDD577 pKa = 3.31GTPDD581 pKa = 3.49GAAITLTPSVAPGATLCLVAQQPVAAGTAAGEE613 pKa = 4.43TPVTFTATSTVTPSRR628 pKa = 11.84TTSVTDD634 pKa = 3.3TLRR637 pKa = 11.84VNAVVSGTFGPDD649 pKa = 3.14GAQSTIPGGSVTYY662 pKa = 10.85SHH664 pKa = 7.07TLTNTSNGAADD675 pKa = 3.87FTVLPFTSAQGFVYY689 pKa = 10.22SYY691 pKa = 9.17ATSSGGPFASTLSGTLAPGASTPLFVRR718 pKa = 11.84VNVPASTAGTPAEE731 pKa = 3.95AAAISVTLEE740 pKa = 3.84AQAAPQPAATLQVTDD755 pKa = 3.51TTTVQNVLASVVKK768 pKa = 9.93SVRR771 pKa = 11.84LCADD775 pKa = 3.68VSCTVTSAITGGQVSPGDD793 pKa = 3.54VLQYY797 pKa = 10.8TLTVQNSGSSPLNGAVLIDD816 pKa = 3.7TVPANTTFRR825 pKa = 11.84ALGGNNAALLYY836 pKa = 10.49SVDD839 pKa = 4.91GGGSWTATPPGALPTGDD856 pKa = 3.76FQAGLDD862 pKa = 3.84TNGDD866 pKa = 3.86NVVDD870 pKa = 4.06TADD873 pKa = 3.14ILAPGTSFEE882 pKa = 4.37VTFTVQVNN890 pKa = 3.38

Molecular weight: 87.35 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A7C9HRY8|A0A7C9HRY8_9DEIO GIY-YIG nuclease family protein OS=Deinococcus sp. HMF7620 OX=2682977 GN=GO986_11375 PE=4 SV=1
MM1 pKa = 6.93NQRR4 pKa = 11.84NGALLAVLAMASVAAASPLTGGAQTLVMRR33 pKa = 11.84LARR36 pKa = 11.84AGDD39 pKa = 3.5VSMTGVRR46 pKa = 11.84WTEE49 pKa = 3.88DD50 pKa = 2.75GTTKK54 pKa = 10.35VVSRR58 pKa = 11.84AFNAQKK64 pKa = 10.9YY65 pKa = 9.52CLTEE69 pKa = 3.59PTLNLLQRR77 pKa = 11.84QPTNVGVQAMVFLEE91 pKa = 4.39FRR93 pKa = 11.84CVNRR97 pKa = 11.84IQGKK101 pKa = 9.67ALTPEE106 pKa = 4.0LALAFLRR113 pKa = 11.84SVGYY117 pKa = 8.02TVSGSNLLTNLLNNPPAANALATASQTAVTPMTPRR152 pKa = 11.84NN153 pKa = 3.49

Molecular weight: 16.19 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4347

0

4347

1325002

25

3293

304.8

32.82

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.047 ± 0.065

0.614 ± 0.011

5.051 ± 0.027

5.26 ± 0.036

2.976 ± 0.022

8.971 ± 0.045

2.195 ± 0.024

3.103 ± 0.033

2.354 ± 0.036

11.992 ± 0.058

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.733 ± 0.018

2.343 ± 0.028

5.976 ± 0.042

4.326 ± 0.028

7.255 ± 0.037

4.967 ± 0.03

6.362 ± 0.035

7.708 ± 0.032

1.474 ± 0.019

2.293 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski