Aeromonas phage PS

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; unclassified Autographiviridae

Average proteome isoelectric point is 6.36

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 49 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6H0X6P2|A0A6H0X6P2_9CAUD DNA maturase B OS=Aeromonas phage PS OX=2723762 PE=4 SV=1
MM1 pKa = 7.93DD2 pKa = 5.18FAPTTNYY9 pKa = 9.83IVDD12 pKa = 3.45VTTADD17 pKa = 3.52KK18 pKa = 11.37AEE20 pKa = 4.28LMAALAGVSGIVSVQDD36 pKa = 3.01GGVYY40 pKa = 10.09RR41 pKa = 11.84EE42 pKa = 4.44DD43 pKa = 3.25NAYY46 pKa = 10.21SQVHH50 pKa = 5.86IEE52 pKa = 4.22ALNAVWTLKK61 pKa = 10.64QLDD64 pKa = 3.78ALLYY68 pKa = 9.3SLNYY72 pKa = 10.15DD73 pKa = 3.3VVGIVV78 pKa = 3.18

Molecular weight: 8.41 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6H0X6S9|A0A6H0X6S9_9CAUD DNA primase OS=Aeromonas phage PS OX=2723762 PE=4 SV=1
MM1 pKa = 6.97RR2 pKa = 11.84TRR4 pKa = 11.84RR5 pKa = 11.84EE6 pKa = 3.87ATQLRR11 pKa = 11.84IQRR14 pKa = 11.84RR15 pKa = 11.84KK16 pKa = 8.4EE17 pKa = 3.73AEE19 pKa = 3.81EE20 pKa = 4.04ALEE23 pKa = 3.99QQRR26 pKa = 11.84RR27 pKa = 11.84DD28 pKa = 3.25AAQKK32 pKa = 10.71LGISYY37 pKa = 9.31EE38 pKa = 4.2SYY40 pKa = 8.48MARR43 pKa = 11.84FIHH46 pKa = 6.66LKK48 pKa = 10.07VGYY51 pKa = 9.94

Molecular weight: 6.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

49

0

49

12012

42

991

245.1

27.09

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.807 ± 0.572

1.199 ± 0.19

5.794 ± 0.192

6.011 ± 0.387

3.272 ± 0.186

7.243 ± 0.396

1.79 ± 0.165

4.62 ± 0.242

5.47 ± 0.326

8.625 ± 0.284

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.697 ± 0.198

4.113 ± 0.293

4.104 ± 0.321

4.462 ± 0.277

5.07 ± 0.29

6.419 ± 0.38

6.227 ± 0.313

7.801 ± 0.341

1.399 ± 0.11

3.879 ± 0.254
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski