Mungbean yellow mosaic India virus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus

Average proteome isoelectric point is 8.14

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 9 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q9WH22|Q9WH22_9GEMI Replication enhancer OS=Mungbean yellow mosaic India virus OX=223287 GN=AC3 PE=3 SV=1
MM1 pKa = 7.9VLILRR6 pKa = 11.84CLLVVVNNIIINLEE20 pKa = 3.94EE21 pKa = 4.52TIHH24 pKa = 6.49HH25 pKa = 6.32GLFFTSILATSNSGTKK41 pKa = 10.6LSQDD45 pKa = 5.05LITITQIVLHH55 pKa = 6.29SGCTGLVVIHH65 pKa = 6.08VEE67 pKa = 4.18HH68 pKa = 6.44LTKK71 pKa = 10.39IHH73 pKa = 6.9GCTKK77 pKa = 9.34WSSVTTT83 pKa = 4.04

Molecular weight: 9.09 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q9WH23|Q9WH23_9GEMI Transcriptional activator protein OS=Mungbean yellow mosaic India virus OX=223287 GN=AC2 PE=3 SV=1
MM1 pKa = 8.31DD2 pKa = 4.43FRR4 pKa = 11.84TGEE7 pKa = 4.37NITAAQLRR15 pKa = 11.84SGVYY19 pKa = 8.64IWEE22 pKa = 4.28VQNPLSFKK30 pKa = 10.41IMHH33 pKa = 6.97HH34 pKa = 5.82SPILAEE40 pKa = 4.06SRR42 pKa = 11.84MNGHH46 pKa = 5.91QAAHH50 pKa = 6.08MFNHH54 pKa = 6.73RR55 pKa = 11.84LKK57 pKa = 10.64KK58 pKa = 10.07ALGMHH63 pKa = 6.58KK64 pKa = 10.4CFLDD68 pKa = 3.52LKK70 pKa = 9.75LYY72 pKa = 10.47HH73 pKa = 6.52YY74 pKa = 9.28MKK76 pKa = 9.56ATSGMILSIFRR87 pKa = 11.84NQLFKK92 pKa = 10.9FLNNLGVISLANILYY107 pKa = 8.86FASDD111 pKa = 3.3FLYY114 pKa = 11.11NKK116 pKa = 8.86TPLGGGCKK124 pKa = 10.2LYY126 pKa = 11.07AA127 pKa = 4.49

Molecular weight: 14.54 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

9

0

9

1686

74

361

187.3

21.4

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.219 ± 0.619

2.372 ± 0.284

4.686 ± 0.357

4.567 ± 0.512

4.389 ± 0.408

5.397 ± 0.509

3.321 ± 0.482

6.287 ± 0.806

6.88 ± 0.466

8.66 ± 0.905

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.669 ± 0.515

6.05 ± 0.359

5.279 ± 0.457

3.796 ± 0.321

6.109 ± 0.455

8.363 ± 0.759

5.635 ± 0.664

4.923 ± 0.652

1.246 ± 0.12

4.152 ± 0.397
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski