Mamestra configurata nucleopolyhedrovirus A

Taxonomy: Viruses; Naldaviricetes; Lefavirales; Baculoviridae; Alphabaculovirus

Average proteome isoelectric point is 6.76

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 168 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q8QLD9|Q8QLD9_9ABAC Maco-A 95 OS=Mamestra configurata nucleopolyhedrovirus A OX=207830 PE=4 SV=1
MM1 pKa = 7.44NSAHH5 pKa = 7.51DD6 pKa = 4.27DD7 pKa = 3.25VSMQANTVFNISYY20 pKa = 10.05EE21 pKa = 4.24EE22 pKa = 3.89QDD24 pKa = 4.29EE25 pKa = 4.26EE26 pKa = 6.3DD27 pKa = 5.27EE28 pKa = 4.91DD29 pKa = 4.4DD30 pKa = 3.84HH31 pKa = 9.76DD32 pKa = 4.43NFIFNVTEE40 pKa = 4.05YY41 pKa = 10.87INFLRR46 pKa = 11.84LLSGQLTLEE55 pKa = 4.18DD56 pKa = 3.48VNYY59 pKa = 9.94EE60 pKa = 3.96FTMDD64 pKa = 4.99SGDD67 pKa = 3.35EE68 pKa = 4.12DD69 pKa = 3.97FDD71 pKa = 4.67YY72 pKa = 11.63DD73 pKa = 5.35HH74 pKa = 7.24GLLDD78 pKa = 3.27IRR80 pKa = 11.84QYY82 pKa = 9.87ITVTTAVDD90 pKa = 3.8TFQPRR95 pKa = 11.84NFIMRR100 pKa = 11.84ADD102 pKa = 4.4CSRR105 pKa = 11.84TDD107 pKa = 3.32TPIINDD113 pKa = 3.93TCCICLDD120 pKa = 4.04ALLEE124 pKa = 4.08TDD126 pKa = 3.81KK127 pKa = 11.5QIAQLDD133 pKa = 3.93ACQHH137 pKa = 5.7GFCAEE142 pKa = 4.17CLFMWLKK149 pKa = 6.85THH151 pKa = 6.48CVCPVCRR158 pKa = 11.84TLCTKK163 pKa = 10.42INLIKK168 pKa = 10.8

Molecular weight: 19.4 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q8QLE9|Q8QLE9_9ABAC BV/ODV-C42 OS=Mamestra configurata nucleopolyhedrovirus A OX=207830 GN=bv/odv-c42 PE=4 SV=1
MM1 pKa = 7.44VYY3 pKa = 10.01RR4 pKa = 11.84RR5 pKa = 11.84SSSSGRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84SSNGRR20 pKa = 11.84RR21 pKa = 11.84RR22 pKa = 11.84SSSGRR27 pKa = 11.84RR28 pKa = 11.84RR29 pKa = 11.84SSNGRR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84SSGGYY41 pKa = 8.18RR42 pKa = 11.84RR43 pKa = 11.84RR44 pKa = 11.84SSGYY48 pKa = 7.94HH49 pKa = 5.4RR50 pKa = 11.84RR51 pKa = 11.84PGRR54 pKa = 11.84PRR56 pKa = 11.84GSRR59 pKa = 11.84TKK61 pKa = 10.54RR62 pKa = 11.84RR63 pKa = 11.84GSSNPYY69 pKa = 8.74GYY71 pKa = 8.53TRR73 pKa = 11.84RR74 pKa = 11.84HH75 pKa = 4.79YY76 pKa = 11.07

Molecular weight: 9.03 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

168

0

168

47173

50

1212

280.8

32.34

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.575 ± 0.145

2.468 ± 0.129

6.43 ± 0.148

5.363 ± 0.177

4.598 ± 0.128

3.506 ± 0.144

2.493 ± 0.085

6.68 ± 0.126

6.605 ± 0.222

9.06 ± 0.149

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.749 ± 0.093

7.299 ± 0.145

3.572 ± 0.142

3.841 ± 0.156

5.005 ± 0.138

6.099 ± 0.138

5.957 ± 0.151

7.099 ± 0.146

0.774 ± 0.055

4.827 ± 0.136
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski