Tomato leaf curl Bangalore virus-[Ban5] satellite DNA beta

Taxonomy: Viruses; Tolecusatellitidae; Betasatellite

Average proteome isoelectric point is 5.37

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A9QXD0|A9QXD0_9VIRU C1 protein OS=Tomato leaf curl Bangalore virus-[Ban5] satellite DNA beta OX=486898 GN=C1 PE=4 SV=1
MM1 pKa = 7.12TIKK4 pKa = 10.47YY5 pKa = 9.83VNRR8 pKa = 11.84NGLMFIINVRR18 pKa = 11.84LKK20 pKa = 10.45GDD22 pKa = 3.62DD23 pKa = 3.77SIKK26 pKa = 10.64VHH28 pKa = 6.13IQLTSTRR35 pKa = 11.84SPALVKK41 pKa = 10.41RR42 pKa = 11.84KK43 pKa = 9.11FVIPYY48 pKa = 8.31GHH50 pKa = 6.84NGLIPPFDD58 pKa = 4.19FNNLEE63 pKa = 3.87EE64 pKa = 4.9GIRR67 pKa = 11.84NILTIMYY74 pKa = 8.84RR75 pKa = 11.84DD76 pKa = 3.37TMFDD80 pKa = 3.54EE81 pKa = 5.77FKK83 pKa = 10.96HH84 pKa = 6.32EE85 pKa = 5.41DD86 pKa = 3.45MTEE89 pKa = 4.35LIDD92 pKa = 3.73MLIMTEE98 pKa = 4.09APVVISGFDD107 pKa = 3.14DD108 pKa = 3.43MMFVLCVCVV117 pKa = 3.4

Molecular weight: 13.55 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A9QXD0|A9QXD0_9VIRU C1 protein OS=Tomato leaf curl Bangalore virus-[Ban5] satellite DNA beta OX=486898 GN=C1 PE=4 SV=1
MM1 pKa = 7.12TIKK4 pKa = 10.47YY5 pKa = 9.83VNRR8 pKa = 11.84NGLMFIINVRR18 pKa = 11.84LKK20 pKa = 10.45GDD22 pKa = 3.62DD23 pKa = 3.77SIKK26 pKa = 10.64VHH28 pKa = 6.13IQLTSTRR35 pKa = 11.84SPALVKK41 pKa = 10.41RR42 pKa = 11.84KK43 pKa = 9.11FVIPYY48 pKa = 8.31GHH50 pKa = 6.84NGLIPPFDD58 pKa = 4.19FNNLEE63 pKa = 3.87EE64 pKa = 4.9GIRR67 pKa = 11.84NILTIMYY74 pKa = 8.84RR75 pKa = 11.84DD76 pKa = 3.37TMFDD80 pKa = 3.54EE81 pKa = 5.77FKK83 pKa = 10.96HH84 pKa = 6.32EE85 pKa = 5.41DD86 pKa = 3.45MTEE89 pKa = 4.35LIDD92 pKa = 3.73MLIMTEE98 pKa = 4.09APVVISGFDD107 pKa = 3.14DD108 pKa = 3.43MMFVLCVCVV117 pKa = 3.4

Molecular weight: 13.55 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

117

117

117

117.0

13.55

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

1.709 ± 0.0

1.709 ± 0.0

7.692 ± 0.0

5.128 ± 0.0

6.838 ± 0.0

5.128 ± 0.0

2.564 ± 0.0

11.111 ± 0.0

5.128 ± 0.0

8.547 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

7.692 ± 0.0

5.983 ± 0.0

4.274 ± 0.0

0.855 ± 0.0

5.128 ± 0.0

3.419 ± 0.0

5.983 ± 0.0

8.547 ± 0.0

0.0 ± 0.0

2.564 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski