Jujube mosaic-associated virus

Taxonomy: Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Badnavirus

Average proteome isoelectric point is 6.55

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A221C9G4|A0A221C9G4_9VIRU P4 OS=Jujube mosaic-associated virus OX=2020956 PE=4 SV=1
MM1 pKa = 7.76ADD3 pKa = 3.34AGRR6 pKa = 11.84SGSSGPSPIVDD17 pKa = 3.72PDD19 pKa = 3.34QLTPLLWLAANYY31 pKa = 9.7RR32 pKa = 11.84DD33 pKa = 3.94RR34 pKa = 11.84LEE36 pKa = 4.83DD37 pKa = 3.63LSARR41 pKa = 11.84PIAADD46 pKa = 3.88KK47 pKa = 10.77YY48 pKa = 10.5DD49 pKa = 3.99QIAQRR54 pKa = 11.84ARR56 pKa = 11.84ATHH59 pKa = 6.19QIAKK63 pKa = 9.66NAVLATLEE71 pKa = 4.13EE72 pKa = 4.28MSQVLEE78 pKa = 3.89AQKK81 pKa = 11.28NYY83 pKa = 10.29FQMSAIKK90 pKa = 10.34DD91 pKa = 3.51NYY93 pKa = 10.8YY94 pKa = 11.19GDD96 pKa = 5.32LYY98 pKa = 10.64PLLKK102 pKa = 10.43QNQEE106 pKa = 3.8AFEE109 pKa = 4.16KK110 pKa = 10.65AKK112 pKa = 10.57QAVEE116 pKa = 4.02RR117 pKa = 11.84TLEE120 pKa = 4.26LDD122 pKa = 3.35VSLL125 pKa = 5.1

Molecular weight: 13.98 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A221C9G3|A0A221C9G3_9VIRU P3a OS=Jujube mosaic-associated virus OX=2020956 PE=4 SV=1
MM1 pKa = 7.29TSWAYY6 pKa = 8.58TAEE9 pKa = 4.07KK10 pKa = 10.15QSYY13 pKa = 8.69KK14 pKa = 10.75DD15 pKa = 3.31AVAATEE21 pKa = 4.49SIEE24 pKa = 4.07APAVGFARR32 pKa = 11.84PAEE35 pKa = 4.12YY36 pKa = 10.57RR37 pKa = 11.84NTLASLGAVTKK48 pKa = 10.5QNNTILVILTEE59 pKa = 4.15LTEE62 pKa = 4.38KK63 pKa = 11.13VNFLQLQVQQLQQQVLKK80 pKa = 11.02GKK82 pKa = 10.36APEE85 pKa = 4.08NLEE88 pKa = 3.8QSISDD93 pKa = 4.5LSNKK97 pKa = 9.71LAGLKK102 pKa = 10.16VDD104 pKa = 4.6GADD107 pKa = 3.6SAIPKK112 pKa = 9.9KK113 pKa = 10.68KK114 pKa = 10.1GVLYY118 pKa = 10.34VYY120 pKa = 9.39QKK122 pKa = 10.8PSDD125 pKa = 3.27ILDD128 pKa = 3.43RR129 pKa = 11.84EE130 pKa = 4.49KK131 pKa = 11.11ARR133 pKa = 11.84KK134 pKa = 8.63

Molecular weight: 14.74 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

2278

125

1597

455.6

51.71

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.585 ± 1.689

1.536 ± 0.757

6.541 ± 1.119

6.76 ± 0.995

3.029 ± 0.623

5.356 ± 0.892

2.371 ± 0.47

6.014 ± 0.569

6.102 ± 1.368

9.35 ± 1.081

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.502 ± 0.465

4.478 ± 0.436

5.575 ± 1.186

5.663 ± 0.76

5.312 ± 1.262

6.409 ± 0.908

5.97 ± 0.91

5.312 ± 0.824

1.449 ± 0.319

3.687 ± 0.34
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski