Torque teno midi virus 8

Taxonomy: Viruses; Anelloviridae; Gammatorquevirus

Average proteome isoelectric point is 7.31

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A7VLY0|A7VLY0_9VIRU Capsid protein OS=Torque teno midi virus 8 OX=2065049 PE=3 SV=1
MM1 pKa = 7.16QHH3 pKa = 6.75LCSKK7 pKa = 10.96DD8 pKa = 3.54FIKK11 pKa = 10.37PCKK14 pKa = 9.98YY15 pKa = 10.54NEE17 pKa = 3.98EE18 pKa = 4.39TKK20 pKa = 10.6NQLWMSEE27 pKa = 4.22LADD30 pKa = 4.65SHH32 pKa = 7.26DD33 pKa = 3.69IWCSCDD39 pKa = 3.08TPFAHH44 pKa = 7.44LLASIFPPGHH54 pKa = 5.56QDD56 pKa = 3.05RR57 pKa = 11.84GKK59 pKa = 8.84TIQDD63 pKa = 3.04ILEE66 pKa = 4.11RR67 pKa = 11.84DD68 pKa = 4.05YY69 pKa = 11.58KK70 pKa = 9.77QLCHH74 pKa = 6.65SGGPAEE80 pKa = 4.34RR81 pKa = 11.84SHH83 pKa = 7.38GILTGTATGADD94 pKa = 3.25IKK96 pKa = 11.27EE97 pKa = 4.02EE98 pKa = 4.58DD99 pKa = 4.14GLEE102 pKa = 4.15GDD104 pKa = 4.02AEE106 pKa = 4.39EE107 pKa = 4.93FLMAAAAAAAEE118 pKa = 4.39EE119 pKa = 4.57KK120 pKa = 10.61EE121 pKa = 4.23RR122 pKa = 4.7

Molecular weight: 13.52 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A7VLY0|A7VLY0_9VIRU Capsid protein OS=Torque teno midi virus 8 OX=2065049 PE=3 SV=1
MM1 pKa = 7.31PFWWARR7 pKa = 11.84RR8 pKa = 11.84KK9 pKa = 10.25KK10 pKa = 9.8PWYY13 pKa = 9.88SNWNRR18 pKa = 11.84YY19 pKa = 6.51RR20 pKa = 11.84RR21 pKa = 11.84RR22 pKa = 11.84YY23 pKa = 8.8KK24 pKa = 9.61RR25 pKa = 11.84RR26 pKa = 11.84RR27 pKa = 11.84WPRR30 pKa = 11.84RR31 pKa = 11.84RR32 pKa = 11.84RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84IPYY38 pKa = 7.85GRR40 pKa = 11.84RR41 pKa = 11.84RR42 pKa = 11.84RR43 pKa = 11.84RR44 pKa = 11.84RR45 pKa = 11.84RR46 pKa = 11.84RR47 pKa = 11.84KK48 pKa = 8.72RR49 pKa = 11.84KK50 pKa = 8.81VRR52 pKa = 11.84RR53 pKa = 11.84KK54 pKa = 7.41RR55 pKa = 11.84QRR57 pKa = 11.84IIVKK61 pKa = 8.67QWQPEE66 pKa = 4.43SIVKK70 pKa = 10.5CEE72 pKa = 3.87IKK74 pKa = 10.97GLGCLVAGAQGRR86 pKa = 11.84QPFCYY91 pKa = 9.55TNSKK95 pKa = 10.36YY96 pKa = 10.54EE97 pKa = 3.96YY98 pKa = 8.79PQPKK102 pKa = 10.0APGGGGFGAEE112 pKa = 4.52LFTLQYY118 pKa = 11.06LYY120 pKa = 10.94DD121 pKa = 3.44EE122 pKa = 4.42WVARR126 pKa = 11.84RR127 pKa = 11.84NIWTKK132 pKa = 9.79TNDD135 pKa = 3.36YY136 pKa = 10.38KK137 pKa = 11.52DD138 pKa = 3.57LVRR141 pKa = 11.84FTGATFYY148 pKa = 10.72LYY150 pKa = 10.58KK151 pKa = 10.68HH152 pKa = 6.27PTTDD156 pKa = 5.35FIFNYY161 pKa = 10.01NNQPPFLLEE170 pKa = 3.59KK171 pKa = 10.73DD172 pKa = 4.62FYY174 pKa = 11.67NDD176 pKa = 3.27LHH178 pKa = 6.57PQMLLLAKK186 pKa = 9.04HH187 pKa = 5.98HH188 pKa = 6.28RR189 pKa = 11.84VIPSRR194 pKa = 11.84QRR196 pKa = 11.84KK197 pKa = 8.29PLGKK201 pKa = 9.48PYY203 pKa = 10.24IKK205 pKa = 10.78VKK207 pKa = 10.4IKK209 pKa = 10.25PPKK212 pKa = 9.87QMLTEE217 pKa = 4.24WFFQQDD223 pKa = 3.38FATQGLFSIHH233 pKa = 6.24AAAANMQWAYY243 pKa = 11.16YY244 pKa = 10.72NPDD247 pKa = 3.24QQSRR251 pKa = 11.84CLTLYY256 pKa = 10.61SLNIKK261 pKa = 9.91FFANTDD267 pKa = 2.75WSATHH272 pKa = 7.08TGTQMYY278 pKa = 9.25FPYY281 pKa = 10.41NAWPHH286 pKa = 5.26TKK288 pKa = 10.37GLTFWTIDD296 pKa = 3.27SKK298 pKa = 11.74GNKK301 pKa = 7.88TPHH304 pKa = 6.43SIKK307 pKa = 9.57PQNYY311 pKa = 7.95NQSVNYY317 pKa = 9.75LQGFFSQYY325 pKa = 10.04VLQAQKK331 pKa = 9.05ITDD334 pKa = 3.69ADD336 pKa = 4.11DD337 pKa = 3.84NVPAKK342 pKa = 10.65YY343 pKa = 9.15EE344 pKa = 4.04QYY346 pKa = 10.2SAAMSTLLIAAFRR359 pKa = 11.84YY360 pKa = 9.99NPEE363 pKa = 3.78EE364 pKa = 3.93DD365 pKa = 3.17TGQGNVVWLTSTLSNTHH382 pKa = 5.59WEE384 pKa = 4.36RR385 pKa = 11.84PQLSDD390 pKa = 3.93LVIVGKK396 pKa = 8.49PLWLSFYY403 pKa = 10.4GFEE406 pKa = 5.12SFIQKK411 pKa = 8.44TKK413 pKa = 10.33HH414 pKa = 5.85DD415 pKa = 4.45KK416 pKa = 10.8GWLLSGFYY424 pKa = 10.21VCKK427 pKa = 10.42CPYY430 pKa = 10.56LKK432 pKa = 9.78TLSATTQTTFAFIDD446 pKa = 3.48LDD448 pKa = 4.39FIQGKK453 pKa = 9.26LPYY456 pKa = 10.1GEE458 pKa = 5.32TITSQKK464 pKa = 9.55KK465 pKa = 9.38ALWYY469 pKa = 9.84PNVEE473 pKa = 4.12NQVNTVTNLVQCGPYY488 pKa = 8.73IPKK491 pKa = 10.15YY492 pKa = 10.36AFRR495 pKa = 11.84DD496 pKa = 3.5EE497 pKa = 4.61STWEE501 pKa = 3.72LTYY504 pKa = 10.74KK505 pKa = 10.69YY506 pKa = 10.18IFYY509 pKa = 9.72FKK511 pKa = 10.09WGGPYY516 pKa = 10.45VSDD519 pKa = 4.94QPVQNPKK526 pKa = 8.61TQGKK530 pKa = 9.31YY531 pKa = 9.39PVPDD535 pKa = 3.63TVSQAIQISNPLKK548 pKa = 8.7QTCKK552 pKa = 10.81AMLRR556 pKa = 11.84DD557 pKa = 2.94WDD559 pKa = 3.74YY560 pKa = 11.54RR561 pKa = 11.84RR562 pKa = 11.84GIITTTALKK571 pKa = 10.57RR572 pKa = 11.84MSEE575 pKa = 4.07HH576 pKa = 6.36LQTDD580 pKa = 3.47SSVQSDD586 pKa = 3.96DD587 pKa = 4.52SEE589 pKa = 4.56TPKK592 pKa = 10.74KK593 pKa = 10.31KK594 pKa = 10.5EE595 pKa = 3.71KK596 pKa = 7.79TTAEE600 pKa = 3.46IPYY603 pKa = 8.36YY604 pKa = 8.52QEE606 pKa = 3.77KK607 pKa = 8.56TEE609 pKa = 4.12EE610 pKa = 4.1MQSCLLSLFEE620 pKa = 5.35EE621 pKa = 5.16STCQEE626 pKa = 4.27PEE628 pKa = 3.85NLQQLILHH636 pKa = 5.81QQQQQQKK643 pKa = 9.04LKK645 pKa = 11.13SNILKK650 pKa = 10.6LLMDD654 pKa = 5.3LKK656 pKa = 10.31HH657 pKa = 5.45QQRR660 pKa = 11.84ILQHH664 pKa = 5.33HH665 pKa = 6.26TGIEE669 pKa = 3.91

Molecular weight: 79.29 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1306

122

669

326.5

37.65

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.662 ± 1.463

2.374 ± 0.598

4.594 ± 0.662

6.126 ± 1.358

4.058 ± 0.548

5.13 ± 0.426

3.292 ± 0.653

4.518 ± 0.325

8.729 ± 0.736

8.116 ± 0.309

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.761 ± 0.181

3.752 ± 0.545

5.896 ± 0.976

6.738 ± 1.181

5.666 ± 0.735

6.891 ± 1.628

6.968 ± 0.409

2.527 ± 0.798

2.144 ± 0.611

4.058 ± 1.268
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski