Nitrincola tapanii

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Oceanospirillaceae; Nitrincola

Average proteome isoelectric point is 6.06

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2528 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5A9VYS8|A0A5A9VYS8_9GAMM Phenol hydroxylase OS=Nitrincola tapanii OX=1708751 GN=E1H14_12755 PE=4 SV=1
MM1 pKa = 7.53TEE3 pKa = 3.83QADD6 pKa = 3.79EE7 pKa = 4.26MTLHH11 pKa = 6.2FTQAAAAKK19 pKa = 8.73VRR21 pKa = 11.84SLIEE25 pKa = 3.79EE26 pKa = 4.3EE27 pKa = 4.56EE28 pKa = 3.97NDD30 pKa = 3.67NLKK33 pKa = 10.76LRR35 pKa = 11.84VFITGGGCAGFSYY48 pKa = 10.76GFTFDD53 pKa = 3.85EE54 pKa = 5.58DD55 pKa = 3.76VAEE58 pKa = 5.44DD59 pKa = 3.68DD60 pKa = 4.37TAITTDD66 pKa = 3.6GVTLLVDD73 pKa = 3.75PMSFQYY79 pKa = 11.0LVGAQVDD86 pKa = 4.26YY87 pKa = 11.6QEE89 pKa = 5.03GLHH92 pKa = 6.53GSQFMIKK99 pKa = 9.85NPNAATTCGCGSSFSII115 pKa = 5.02

Molecular weight: 12.4 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5A9W0X3|A0A5A9W0X3_9GAMM Uncharacterized protein OS=Nitrincola tapanii OX=1708751 GN=E1H14_10955 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.49RR12 pKa = 11.84ARR14 pKa = 11.84THH16 pKa = 5.91GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.45NGRR28 pKa = 11.84QVLNRR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.93GRR39 pKa = 11.84KK40 pKa = 8.89SLTVV44 pKa = 3.12

Molecular weight: 5.17 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2528

0

2528

850769

23

1600

336.5

37.39

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.913 ± 0.055

1.04 ± 0.018

5.129 ± 0.039

6.575 ± 0.044

3.75 ± 0.031

6.88 ± 0.05

2.381 ± 0.022

5.413 ± 0.042

3.577 ± 0.039

12.227 ± 0.082

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.458 ± 0.023

3.029 ± 0.028

4.543 ± 0.035

5.613 ± 0.052

6.179 ± 0.038

6.032 ± 0.034

4.744 ± 0.027

6.529 ± 0.044

1.391 ± 0.025

2.597 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski