Goose hemorrhagic polyomavirus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Sepolyvirales; Polyomaviridae; Gammapolyomavirus; Anser anser polyomavirus 1

Average proteome isoelectric point is 5.82

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q80FI6|Q80FI6_9POLY ORF-X OS=Goose hemorrhagic polyomavirus OX=208491 GN=ORF-X PE=4 SV=1
MM1 pKa = 7.58SEE3 pKa = 4.07ATRR6 pKa = 11.84KK7 pKa = 9.97PMDD10 pKa = 3.6SEE12 pKa = 4.69GPRR15 pKa = 11.84AASAAAAPRR24 pKa = 11.84TEE26 pKa = 4.8DD27 pKa = 3.91SEE29 pKa = 4.82GPPSAAGGSVGDD41 pKa = 4.24IPAPVPASPAPEE53 pKa = 4.16EE54 pKa = 4.28ASGVPPVPEE63 pKa = 3.75KK64 pKa = 10.88AGPDD68 pKa = 3.54GAAAPHH74 pKa = 6.23ATAGPAGTSSTAAEE88 pKa = 4.33VTEE91 pKa = 5.12DD92 pKa = 4.18PPEE95 pKa = 4.38STPSPEE101 pKa = 4.06RR102 pKa = 11.84DD103 pKa = 3.09GVSPKK108 pKa = 10.72EE109 pKa = 4.25PLTQPSTGSSSTDD122 pKa = 3.21LSPPDD127 pKa = 4.19SPHH130 pKa = 7.64ASDD133 pKa = 6.02DD134 pKa = 4.4DD135 pKa = 4.17MDD137 pKa = 3.91TSPYY141 pKa = 10.59YY142 pKa = 10.31EE143 pKa = 4.81GSCTCTFSLKK153 pKa = 10.04VCCNICSGCNEE164 pKa = 4.56FLNSDD169 pKa = 3.4

Molecular weight: 16.76 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q80FI5|Q80FI5_9POLY Minor capsid protein OS=Goose hemorrhagic polyomavirus OX=208491 GN=VP2 PE=3 SV=1
MM1 pKa = 7.72AIVEE5 pKa = 3.99WRR7 pKa = 11.84PYY9 pKa = 10.58VDD11 pKa = 3.42YY12 pKa = 10.93LFPGFEE18 pKa = 4.04TFVNQFYY25 pKa = 10.19WINPLEE31 pKa = 4.27WGPTLFQRR39 pKa = 11.84VGQAFWDD46 pKa = 3.83LLITEE51 pKa = 4.71GRR53 pKa = 11.84RR54 pKa = 11.84RR55 pKa = 11.84LGEE58 pKa = 4.0ATSAAAQTSAQYY70 pKa = 11.06VYY72 pKa = 11.45DD73 pKa = 4.9LIARR77 pKa = 11.84TAEE80 pKa = 3.98RR81 pKa = 11.84ARR83 pKa = 11.84WTVVEE88 pKa = 4.77GPGEE92 pKa = 4.14AYY94 pKa = 10.24RR95 pKa = 11.84GLIEE99 pKa = 4.74YY100 pKa = 10.39YY101 pKa = 10.99GEE103 pKa = 4.18LPPWKK108 pKa = 9.18PHH110 pKa = 4.93SLHH113 pKa = 7.13RR114 pKa = 11.84GLPWEE119 pKa = 4.26QKK121 pKa = 5.82TTEE124 pKa = 4.15TGGNGQPRR132 pKa = 11.84QQPDD136 pKa = 3.01SGEE139 pKa = 4.1TVYY142 pKa = 10.46QQPVPGGANQRR153 pKa = 11.84AAPDD157 pKa = 3.11WMLPLILGLYY167 pKa = 7.05GTVYY171 pKa = 10.26PGWKK175 pKa = 10.19AEE177 pKa = 3.95VALLEE182 pKa = 4.9KK183 pKa = 10.69EE184 pKa = 4.99DD185 pKa = 3.77GSQGKK190 pKa = 7.81KK191 pKa = 6.51TKK193 pKa = 10.14KK194 pKa = 8.65RR195 pKa = 11.84TRR197 pKa = 11.84ASPQTSGKK205 pKa = 9.48RR206 pKa = 11.84RR207 pKa = 11.84YY208 pKa = 9.61RR209 pKa = 11.84GPRR212 pKa = 11.84GQDD215 pKa = 2.64RR216 pKa = 11.84AA217 pKa = 3.8

Molecular weight: 24.66 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1861

160

636

310.2

34.25

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.598 ± 1.713

2.149 ± 0.588

4.782 ± 0.658

7.792 ± 0.653

3.385 ± 0.472

7.899 ± 1.18

1.934 ± 0.363

3.815 ± 0.771

4.89 ± 0.808

8.866 ± 0.994

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.203 ± 0.387

3.332 ± 0.632

7.577 ± 1.4

4.03 ± 0.57

5.75 ± 0.541

6.663 ± 0.92

5.75 ± 0.581

5.75 ± 0.933

1.343 ± 0.514

3.493 ± 0.381
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski