Lesser panda anellovirus

Taxonomy: Viruses; Anelloviridae; Thetatorquevirus; Torque teno ursid virus 1

Average proteome isoelectric point is 7.83

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2Z2L0X1|A0A2Z2L0X1_9VIRU Capsid protein OS=Lesser panda anellovirus OX=2012640 PE=3 SV=1
MM1 pKa = 8.14VEE3 pKa = 5.05FILPYY8 pKa = 8.34GQSRR12 pKa = 11.84RR13 pKa = 11.84SCKK16 pKa = 9.79RR17 pKa = 11.84SRR19 pKa = 11.84FDD21 pKa = 3.68AVGGCRR27 pKa = 11.84RR28 pKa = 11.84TSGACPEE35 pKa = 4.04SRR37 pKa = 11.84GLSGKK42 pKa = 10.47GEE44 pKa = 4.0YY45 pKa = 9.95RR46 pKa = 11.84QMGSPEE52 pKa = 4.2GQSADD57 pKa = 3.46AGHH60 pKa = 6.58SEE62 pKa = 4.22TLWLEE67 pKa = 4.17SCLLTHH73 pKa = 7.18SLWCKK78 pKa = 9.29CNDD81 pKa = 2.83WRR83 pKa = 11.84EE84 pKa = 4.27HH85 pKa = 4.64VRR87 pKa = 11.84KK88 pKa = 8.24TDD90 pKa = 3.47STWRR94 pKa = 11.84SSTGGGDD101 pKa = 3.17RR102 pKa = 11.84TGEE105 pKa = 3.95EE106 pKa = 4.21GGVPDD111 pKa = 4.26EE112 pKa = 4.52VAVHH116 pKa = 6.36FDD118 pKa = 3.47LGFSEE123 pKa = 5.38EE124 pKa = 4.47DD125 pKa = 3.22DD126 pKa = 3.68TRR128 pKa = 11.84TGEE131 pKa = 3.97RR132 pKa = 3.67

Molecular weight: 14.62 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2Z2L314|A0A2Z2L314_9VIRU ORF3 OS=Lesser panda anellovirus OX=2012640 PE=4 SV=1
MM1 pKa = 7.48AFFYY5 pKa = 10.77RR6 pKa = 11.84RR7 pKa = 11.84WRR9 pKa = 11.84PYY11 pKa = 8.07WRR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84WCPRR19 pKa = 11.84RR20 pKa = 11.84GGRR23 pKa = 11.84SFRR26 pKa = 11.84PRR28 pKa = 11.84IFRR31 pKa = 11.84RR32 pKa = 11.84RR33 pKa = 11.84RR34 pKa = 11.84YY35 pKa = 7.02TYY37 pKa = 8.52RR38 pKa = 11.84RR39 pKa = 11.84KK40 pKa = 9.04VRR42 pKa = 11.84RR43 pKa = 11.84RR44 pKa = 11.84RR45 pKa = 11.84RR46 pKa = 11.84RR47 pKa = 11.84RR48 pKa = 11.84RR49 pKa = 11.84PRR51 pKa = 11.84RR52 pKa = 11.84VRR54 pKa = 11.84PKK56 pKa = 10.48KK57 pKa = 9.97IIQWQPQHH65 pKa = 5.24QAKK68 pKa = 10.36CIIRR72 pKa = 11.84GWFPAMWAHH81 pKa = 6.13SAFVTYY87 pKa = 10.13PMYY90 pKa = 10.86KK91 pKa = 9.76WIPAKK96 pKa = 10.21QGEE99 pKa = 4.48YY100 pKa = 10.57GHH102 pKa = 6.68FFTMEE107 pKa = 3.84GCVTLMHH114 pKa = 6.36FTLGLLYY121 pKa = 10.57KK122 pKa = 10.12EE123 pKa = 4.07WLKK126 pKa = 10.19MRR128 pKa = 11.84NTWSRR133 pKa = 11.84SNDD136 pKa = 3.06GFDD139 pKa = 3.14LAKK142 pKa = 10.9YY143 pKa = 10.28SGTKK147 pKa = 8.84LTFRR151 pKa = 11.84PHH153 pKa = 6.56PFVSYY158 pKa = 8.32MVWWEE163 pKa = 3.99RR164 pKa = 11.84NFGEE168 pKa = 4.26VHH170 pKa = 6.92PIQYY174 pKa = 10.21RR175 pKa = 11.84SIHH178 pKa = 6.34PAVIMHH184 pKa = 5.96QPNHH188 pKa = 6.17IFVPSLLVNPXGRR201 pKa = 11.84KK202 pKa = 8.17RR203 pKa = 11.84KK204 pKa = 9.24VWIPPPSTLTSTWSFMKK221 pKa = 9.83YY222 pKa = 5.73WCEE225 pKa = 3.48VALFRR230 pKa = 11.84VGITPINLKK239 pKa = 9.97SQFLHH244 pKa = 6.51IGTVSTGWWIGYY256 pKa = 7.31QPKK259 pKa = 10.56NNYY262 pKa = 8.01NHH264 pKa = 6.6FSDD267 pKa = 5.37PDD269 pKa = 3.66MLPQMNSEE277 pKa = 4.28QYY279 pKa = 10.78CVGEE283 pKa = 4.24GNKK286 pKa = 9.33IFYY289 pKa = 9.2KK290 pKa = 9.77WWWDD294 pKa = 3.56DD295 pKa = 3.32GTDD298 pKa = 3.86NKK300 pKa = 10.1WGAKK304 pKa = 9.31NRR306 pKa = 11.84TDD308 pKa = 3.39QYY310 pKa = 11.13NNEE313 pKa = 4.34TGVLPPVAQKK323 pKa = 9.93TSTDD327 pKa = 3.47NIVPINVPYY336 pKa = 10.21WLAFWGAGTTFLEE349 pKa = 4.02WDD351 pKa = 4.02KK352 pKa = 11.66NDD354 pKa = 4.38LYY356 pKa = 10.79IWWYY360 pKa = 10.69YY361 pKa = 11.06DD362 pKa = 4.28DD363 pKa = 4.45NSKK366 pKa = 9.75TNIDD370 pKa = 4.17EE371 pKa = 4.71LDD373 pKa = 3.5GAAKK377 pKa = 9.47KK378 pKa = 10.34KK379 pKa = 9.95RR380 pKa = 11.84WINVSCGQMLNGIGIQNIIQGGPFVLNPNDD410 pKa = 3.6IFPEE414 pKa = 4.11KK415 pKa = 10.59NINLSFWYY423 pKa = 10.16QSFWRR428 pKa = 11.84WGGISPSPPINVDD441 pKa = 3.15PCQVDD446 pKa = 3.67PAHH449 pKa = 6.57APQRR453 pKa = 11.84RR454 pKa = 11.84RR455 pKa = 11.84VPRR458 pKa = 11.84GVPEE462 pKa = 4.28SPKK465 pKa = 10.71HH466 pKa = 5.83VGDD469 pKa = 3.84WSLHH473 pKa = 5.26PWDD476 pKa = 4.6LTRR479 pKa = 11.84QGLITEE485 pKa = 5.01AKK487 pKa = 9.44LKK489 pKa = 10.55QIFGFSPDD497 pKa = 4.48DD498 pKa = 3.5IAGLPHH504 pKa = 6.7PPSRR508 pKa = 11.84EE509 pKa = 3.97SSPATTDD516 pKa = 3.0SSPPPTQLRR525 pKa = 11.84AVRR528 pKa = 11.84RR529 pKa = 11.84KK530 pKa = 9.63RR531 pKa = 11.84SRR533 pKa = 11.84SEE535 pKa = 5.03DD536 pKa = 2.91LWQSPDD542 pKa = 3.39SEE544 pKa = 4.41EE545 pKa = 4.65EE546 pKa = 4.06KK547 pKa = 11.03VQTGDD552 pKa = 3.49TLSLLAQRR560 pKa = 11.84IEE562 pKa = 3.89RR563 pKa = 11.84EE564 pKa = 3.11RR565 pKa = 11.84DD566 pKa = 3.18FRR568 pKa = 11.84HH569 pKa = 6.55KK570 pKa = 10.12LRR572 pKa = 11.84KK573 pKa = 9.58RR574 pKa = 11.84IRR576 pKa = 11.84DD577 pKa = 3.31WLTT580 pKa = 2.8

Molecular weight: 68.91 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

974

132

580

324.7

37.47

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.209 ± 0.449

2.156 ± 0.919

4.928 ± 0.533

5.749 ± 1.933

3.799 ± 0.909

8.316 ± 2.045

2.669 ± 0.157

3.799 ± 1.821

5.031 ± 0.687

5.955 ± 0.081

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.745 ± 0.286

3.388 ± 1.297

6.982 ± 1.455

3.491 ± 0.724

10.575 ± 0.535

9.035 ± 2.647

6.263 ± 0.976

4.415 ± 0.402

4.312 ± 1.21

3.08 ± 0.665
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski