Camponotus floridanus (Florida carpenter ant)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Panarthropoda; Arthropoda; Mandibulata; Pancrustacea; Hexapoda; Insecta; Dicondylia; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae

Average proteome isoelectric point is 7.06

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 14787 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|E2AWA8|E2AWA8_CAMFO Tryptophan 2 3-dioxygenase OS=Camponotus floridanus OX=104421 GN=EAG_03979 PE=3 SV=1
MM1 pKa = 6.66TQYY4 pKa = 11.21SFDD7 pKa = 3.57MSLTLTLTGGSSVLAVSYY25 pKa = 9.91FPAIDD30 pKa = 3.95LTDD33 pKa = 3.55ADD35 pKa = 4.51YY36 pKa = 11.53EE37 pKa = 4.31LGLTDD42 pKa = 4.37FEE44 pKa = 5.13TYY46 pKa = 8.55HH47 pKa = 6.8TIPNVNFSNNKK58 pKa = 9.59FYY60 pKa = 10.93FGNDD64 pKa = 3.31DD65 pKa = 3.85KK66 pKa = 11.48EE67 pKa = 4.05ITIPEE72 pKa = 4.18GSYY75 pKa = 10.27EE76 pKa = 3.72LHH78 pKa = 7.45AINDD82 pKa = 3.68YY83 pKa = 10.74LKK85 pKa = 10.68RR86 pKa = 11.84AILRR90 pKa = 11.84DD91 pKa = 3.61GTPARR96 pKa = 11.84DD97 pKa = 3.29VEE99 pKa = 3.99NDD101 pKa = 3.04YY102 pKa = 11.65DD103 pKa = 4.37EE104 pKa = 5.79EE105 pKa = 4.49YY106 pKa = 10.97QQ107 pKa = 4.05

Molecular weight: 12.21 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|E2A8F8|E2A8F8_CAMFO RNA 3'-terminal phosphate cyclase OS=Camponotus floridanus OX=104421 GN=EAG_06631 PE=3 SV=1
YYY2 pKa = 8.45STRR5 pKa = 11.84THHH8 pKa = 6.27RR9 pKa = 11.84THHH12 pKa = 5.85RR13 pKa = 11.84THHH16 pKa = 5.84RR17 pKa = 11.84THHH20 pKa = 5.84RR21 pKa = 11.84THHH24 pKa = 5.84RR25 pKa = 11.84THHH28 pKa = 5.84RR29 pKa = 11.84THHH32 pKa = 5.84RR33 pKa = 11.84THHH36 pKa = 5.84RR37 pKa = 11.84THHH40 pKa = 5.84RR41 pKa = 11.84THHH44 pKa = 5.84RR45 pKa = 11.84THHH48 pKa = 5.84RR49 pKa = 11.84THHH52 pKa = 5.84RR53 pKa = 11.84THHH56 pKa = 5.84RR57 pKa = 11.84THHH60 pKa = 5.84RR61 pKa = 11.84THHH64 pKa = 5.84RR65 pKa = 11.84THHH68 pKa = 5.84RR69 pKa = 11.84THHH72 pKa = 5.84RR73 pKa = 11.84THHH76 pKa = 5.84RR77 pKa = 11.84THHH80 pKa = 5.84RR81 pKa = 11.84THHH84 pKa = 5.84RR85 pKa = 11.84THHH88 pKa = 5.84RR89 pKa = 11.84THHH92 pKa = 5.84RR93 pKa = 11.84THHH96 pKa = 5.84RR97 pKa = 11.84THHH100 pKa = 5.84RR101 pKa = 11.84THHH104 pKa = 5.84RR105 pKa = 11.84THHH108 pKa = 5.84RR109 pKa = 11.84THHH112 pKa = 5.84RR113 pKa = 11.84THHH116 pKa = 5.84RR117 pKa = 11.84THHH120 pKa = 5.92RR121 pKa = 11.84THHH124 pKa = 4.62TVFSFNLVFKKK135 pKa = 10.91YY136 pKa = 9.26TICINFVHHH145 pKa = 6.89L

Molecular weight: 17.11 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

14787

0

14787

6383122

9

12221

431.7

48.78

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.12 ± 0.019

1.998 ± 0.031

5.43 ± 0.016

6.722 ± 0.031

3.6 ± 0.016

5.266 ± 0.029

2.523 ± 0.011

6.22 ± 0.02

6.407 ± 0.029

9.042 ± 0.032

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.306 ± 0.01

5.218 ± 0.022

4.921 ± 0.029

4.192 ± 0.02

5.801 ± 0.023

8.105 ± 0.029

5.985 ± 0.021

5.832 ± 0.014

1.102 ± 0.008

3.209 ± 0.015
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski