Coccinia mosaic Tamil Nadu virus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus

Average proteome isoelectric point is 8.16

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A076L608|A0A076L608_9GEMI Capsid protein OS=Coccinia mosaic Tamil Nadu virus OX=1532882 GN=AV1 PE=3 SV=1
MM1 pKa = 7.49PRR3 pKa = 11.84QRR5 pKa = 11.84SFQIKK10 pKa = 9.71AKK12 pKa = 10.49NIFLTYY18 pKa = 8.78PKK20 pKa = 10.44CPIPKK25 pKa = 9.6EE26 pKa = 3.9QMLDD30 pKa = 2.76ILKK33 pKa = 10.68NIEE36 pKa = 4.33CPSDD40 pKa = 3.2KK41 pKa = 10.97LFIRR45 pKa = 11.84VAQEE49 pKa = 3.46RR50 pKa = 11.84HH51 pKa = 4.78QDD53 pKa = 3.38GSLHH57 pKa = 5.13IHH59 pKa = 6.91ALIQFKK65 pKa = 10.86GKK67 pKa = 10.05AQFRR71 pKa = 11.84NPRR74 pKa = 11.84HH75 pKa = 5.9FDD77 pKa = 3.16VVHH80 pKa = 6.13PHH82 pKa = 6.67SSTQFHH88 pKa = 7.2PNVQGAKK95 pKa = 9.25SCSDD99 pKa = 3.11VKK101 pKa = 11.23SYY103 pKa = 10.84IEE105 pKa = 4.11KK106 pKa = 10.91DD107 pKa = 2.87GDD109 pKa = 3.89YY110 pKa = 11.12VDD112 pKa = 3.43WGEE115 pKa = 3.87FQIDD119 pKa = 3.21GRR121 pKa = 11.84SARR124 pKa = 11.84GGQQTINDD132 pKa = 4.01AAAEE136 pKa = 4.02ALNSGSTEE144 pKa = 3.39AAMNILRR151 pKa = 11.84EE152 pKa = 4.32KK153 pKa = 10.53LPKK156 pKa = 10.25DD157 pKa = 4.05YY158 pKa = 10.76IFQYY162 pKa = 10.97HH163 pKa = 5.93NYY165 pKa = 7.76KK166 pKa = 10.03TNLDD170 pKa = 4.25RR171 pKa = 11.84IFAAPVDD178 pKa = 4.13TYY180 pKa = 11.38VCPFSKK186 pKa = 10.5EE187 pKa = 4.16SFDD190 pKa = 3.73LVPRR194 pKa = 11.84EE195 pKa = 3.97LVDD198 pKa = 3.21WASEE202 pKa = 4.22NIVCSAARR210 pKa = 11.84PVRR213 pKa = 11.84PIGIVLEE220 pKa = 4.47GDD222 pKa = 3.33SRR224 pKa = 11.84TGKK227 pKa = 8.52TMWARR232 pKa = 11.84SLGPHH237 pKa = 6.71NYY239 pKa = 10.18LCGHH243 pKa = 7.37LDD245 pKa = 4.41LSPKK249 pKa = 10.0IYY251 pKa = 11.0SNDD254 pKa = 2.4AWYY257 pKa = 10.92NVIDD261 pKa = 5.2DD262 pKa = 4.41VDD264 pKa = 3.61PHH266 pKa = 5.85YY267 pKa = 11.0LKK269 pKa = 10.7HH270 pKa = 6.2FKK272 pKa = 10.7EE273 pKa = 4.46FMGAQRR279 pKa = 11.84DD280 pKa = 3.81WQSNTKK286 pKa = 9.47YY287 pKa = 10.28GKK289 pKa = 9.35PVMIKK294 pKa = 10.55GGIPTIFLCNPGPSSSYY311 pKa = 11.22KK312 pKa = 10.6EE313 pKa = 4.19FLDD316 pKa = 3.54EE317 pKa = 5.43DD318 pKa = 4.1KK319 pKa = 11.59NSALKK324 pKa = 10.43SWALKK329 pKa = 10.23NAIFYY334 pKa = 9.32TLEE337 pKa = 4.21GPLYY341 pKa = 10.6SGRR344 pKa = 11.84QQNTEE349 pKa = 3.86QEE351 pKa = 4.25NEE353 pKa = 4.1EE354 pKa = 4.39VNSQEE359 pKa = 4.35TNN361 pKa = 3.02

Molecular weight: 41.17 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A076LA79|A0A076LA79_9GEMI Nuclear shuttle protein OS=Coccinia mosaic Tamil Nadu virus OX=1532882 GN=BV1 PE=3 SV=1
MM1 pKa = 7.71SKK3 pKa = 10.35RR4 pKa = 11.84PADD7 pKa = 3.87IIISTPASKK16 pKa = 10.3VRR18 pKa = 11.84RR19 pKa = 11.84RR20 pKa = 11.84LNFDD24 pKa = 2.79SPYY27 pKa = 10.47AVRR30 pKa = 11.84AAVPIVRR37 pKa = 11.84GTKK40 pKa = 9.45ARR42 pKa = 11.84AWANRR47 pKa = 11.84PMNRR51 pKa = 11.84KK52 pKa = 7.87PRR54 pKa = 11.84MYY56 pKa = 10.68RR57 pKa = 11.84MYY59 pKa = 10.44RR60 pKa = 11.84SPDD63 pKa = 3.21VPRR66 pKa = 11.84GCEE69 pKa = 4.34GPCKK73 pKa = 10.01VQSFEE78 pKa = 4.06SRR80 pKa = 11.84HH81 pKa = 5.57DD82 pKa = 3.47VSHH85 pKa = 6.69IGKK88 pKa = 8.76VLCVSDD94 pKa = 3.57VTRR97 pKa = 11.84GTGLTHH103 pKa = 7.09RR104 pKa = 11.84VGKK107 pKa = 9.66RR108 pKa = 11.84FCVKK112 pKa = 9.94SVYY115 pKa = 10.52VLGKK119 pKa = 9.41IWMDD123 pKa = 3.35EE124 pKa = 4.04NIKK127 pKa = 9.32TKK129 pKa = 10.56NHH131 pKa = 5.33TNSVIFFLVRR141 pKa = 11.84DD142 pKa = 3.99RR143 pKa = 11.84RR144 pKa = 11.84PTGSPQDD151 pKa = 3.6FGEE154 pKa = 4.28VFNMFDD160 pKa = 4.35SEE162 pKa = 4.37PSTATVKK169 pKa = 10.38NVHH172 pKa = 6.5RR173 pKa = 11.84DD174 pKa = 3.15RR175 pKa = 11.84YY176 pKa = 8.77QVLRR180 pKa = 11.84KK181 pKa = 9.12WYY183 pKa = 8.16STVTGGTYY191 pKa = 10.38ASKK194 pKa = 10.48EE195 pKa = 3.66QALVKK200 pKa = 10.68KK201 pKa = 9.39FVRR204 pKa = 11.84VNNYY208 pKa = 7.82VVYY211 pKa = 10.24NQQEE215 pKa = 3.85PGKK218 pKa = 10.12YY219 pKa = 9.64EE220 pKa = 3.87NHH222 pKa = 6.31TEE224 pKa = 3.99NALMLYY230 pKa = 7.52MACTHH235 pKa = 7.06ASNPVYY241 pKa = 9.86ATLKK245 pKa = 9.47IRR247 pKa = 11.84IYY249 pKa = 10.67FYY251 pKa = 11.26DD252 pKa = 3.51SVSNN256 pKa = 3.9

Molecular weight: 29.46 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

1613

85

361

201.6

22.96

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.774 ± 0.519

2.108 ± 0.333

5.27 ± 0.409

4.774 ± 0.455

3.968 ± 0.382

5.58 ± 0.411

3.1 ± 0.318

5.022 ± 0.57

5.952 ± 0.412

6.572 ± 0.634

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.294 ± 0.299

5.022 ± 0.459

5.518 ± 0.464

3.596 ± 0.575

7.502 ± 0.722

9.361 ± 0.885

6.758 ± 0.78

7.316 ± 0.982

1.302 ± 0.144

4.216 ± 0.395
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski