Xanthomonas phage Xf109

Taxonomy: Viruses; Monodnaviria; Loebvirae; Hofneiviricota; Faserviricetes; Tubulavirales; Inoviridae; Xylivirus; Xanthomonas virus Xf109

Average proteome isoelectric point is 8.26

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 12 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1D6ZIU6|A0A1D6ZIU6_9VIRU DNA-Binding protein G5P OS=Xanthomonas phage Xf109 OX=1852597 GN=Xf109_2 PE=3 SV=1
MM1 pKa = 7.77AGGLRR6 pKa = 11.84DD7 pKa = 3.72CLRR10 pKa = 11.84GFRR13 pKa = 11.84IMGWLARR20 pKa = 11.84VFASAIARR28 pKa = 11.84RR29 pKa = 11.84LAYY32 pKa = 10.38VLVAATLAWCGIGCASAQDD51 pKa = 4.37FGTQGAAYY59 pKa = 8.25SACMSQTAAYY69 pKa = 8.79LASLGRR75 pKa = 11.84GANDD79 pKa = 3.87RR80 pKa = 11.84NPEE83 pKa = 4.17CNVEE87 pKa = 4.15QGSQAYY93 pKa = 9.58RR94 pKa = 11.84GQFEE98 pKa = 4.21TRR100 pKa = 11.84DD101 pKa = 3.73CSSCDD106 pKa = 2.74WYY108 pKa = 10.62RR109 pKa = 11.84AYY111 pKa = 10.81YY112 pKa = 10.46GYY114 pKa = 10.51FPWSKK119 pKa = 11.11GCDD122 pKa = 3.37QEE124 pKa = 4.35PDD126 pKa = 3.69YY127 pKa = 11.04TGSGPWGTYY136 pKa = 9.79VGTARR141 pKa = 11.84NGSIGCRR148 pKa = 11.84NGCDD152 pKa = 3.55GVWFGNGDD160 pKa = 4.33DD161 pKa = 3.78TMTWNATGAICPKK174 pKa = 10.5DD175 pKa = 3.59PEE177 pKa = 4.47KK178 pKa = 10.67TCDD181 pKa = 3.58AMSGGYY187 pKa = 8.8GWNGYY192 pKa = 10.1LGVCEE197 pKa = 4.44PPPTEE202 pKa = 4.26EE203 pKa = 4.33CPEE206 pKa = 4.09GQVPDD211 pKa = 4.11GKK213 pKa = 10.9GGCSSNKK220 pKa = 9.59CPEE223 pKa = 3.96GMLLQADD230 pKa = 4.98GTCAPKK236 pKa = 10.83KK237 pKa = 9.58NDD239 pKa = 3.67CPAGQIRR246 pKa = 11.84SPSGSCLPGDD256 pKa = 4.19GQCAAGEE263 pKa = 4.2VRR265 pKa = 11.84GPDD268 pKa = 3.62GTCKK272 pKa = 10.24KK273 pKa = 10.69DD274 pKa = 3.18GDD276 pKa = 4.3GDD278 pKa = 4.23GEE280 pKa = 4.16PDD282 pKa = 3.55EE283 pKa = 5.35PGEE286 pKa = 4.14GDD288 pKa = 2.97KK289 pKa = 11.39SQFSGGDD296 pKa = 3.37SCDD299 pKa = 3.89SPPSCSGDD307 pKa = 3.87AIMCGQARR315 pKa = 11.84IQWRR319 pKa = 11.84IDD321 pKa = 3.14CNTRR325 pKa = 11.84RR326 pKa = 11.84DD327 pKa = 3.65VNITGGSCASMPVCVGEE344 pKa = 3.95NCKK347 pKa = 10.32ALEE350 pKa = 3.9YY351 pKa = 10.77SQLLMQWRR359 pKa = 11.84AACALEE365 pKa = 4.09KK366 pKa = 10.52AANNSGGGTGNNADD380 pKa = 3.25VKK382 pKa = 10.58AIRR385 pKa = 11.84DD386 pKa = 4.11AITGNGTADD395 pKa = 2.97IGADD399 pKa = 3.86GKK401 pKa = 10.07PADD404 pKa = 4.27AFSDD408 pKa = 3.4EE409 pKa = 4.41SGYY412 pKa = 11.23GEE414 pKa = 4.09HH415 pKa = 7.42GYY417 pKa = 8.04PTGEE421 pKa = 4.5LDD423 pKa = 3.36THH425 pKa = 6.16GFGYY429 pKa = 10.55SRR431 pKa = 11.84TCPTIPDD438 pKa = 3.49VAVFGQTLHH447 pKa = 6.82FDD449 pKa = 3.53TSKK452 pKa = 9.79FCQWMVLGGQIVLVMASLVSLRR474 pKa = 11.84LMSQGGSAA482 pKa = 3.86

Molecular weight: 50.4 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1D6ZIV1|A0A1D6ZIV1_9VIRU Uncharacterized protein OS=Xanthomonas phage Xf109 OX=1852597 GN=Xf109_11 PE=4 SV=1
MM1 pKa = 7.43TFDD4 pKa = 2.89TYY6 pKa = 11.55EE7 pKa = 4.21RR8 pKa = 11.84VDD10 pKa = 4.05LTGPWAGFGFQGHH23 pKa = 6.07RR24 pKa = 11.84FFTPEE29 pKa = 4.2NYY31 pKa = 10.47DD32 pKa = 3.09IDD34 pKa = 4.44PCGMRR39 pKa = 11.84YY40 pKa = 8.0WALTCAIARR49 pKa = 11.84EE50 pKa = 4.08WSLMMSEE57 pKa = 4.29EE58 pKa = 4.61RR59 pKa = 11.84NAQSANPRR67 pKa = 11.84TPTATRR73 pKa = 11.84SPGSRR78 pKa = 11.84ISEE81 pKa = 4.28DD82 pKa = 3.26ANVIYY87 pKa = 10.62LRR89 pKa = 11.84DD90 pKa = 3.66VLWRR94 pKa = 11.84RR95 pKa = 11.84RR96 pKa = 11.84EE97 pKa = 3.78KK98 pKa = 10.64RR99 pKa = 11.84LSVGGNPGLADD110 pKa = 3.44SGKK113 pKa = 10.14RR114 pKa = 11.84SPTGRR119 pKa = 11.84GRR121 pKa = 11.84RR122 pKa = 11.84RR123 pKa = 11.84PRR125 pKa = 11.84RR126 pKa = 11.84GG127 pKa = 2.87

Molecular weight: 14.53 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

12

0

12

2202

61

482

183.5

19.99

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.398 ± 0.882

2.316 ± 0.929

5.086 ± 0.715

3.724 ± 0.492

3.815 ± 0.654

9.991 ± 1.204

1.635 ± 0.325

3.951 ± 0.5

4.042 ± 0.653

8.447 ± 1.513

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.543 ± 0.279

2.316 ± 0.339

4.905 ± 0.603

3.951 ± 0.623

7.039 ± 0.947

5.631 ± 0.551

5.858 ± 0.756

6.63 ± 1.124

2.861 ± 0.494

2.861 ± 0.324
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski