Amino acid dipepetide frequency for Fusarium graminearum mycotymovirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
6.247AlaAla: 6.247 ± 0.0
0.446AlaCys: 0.446 ± 0.0
4.909AlaAsp: 4.909 ± 0.0
1.785AlaGlu: 1.785 ± 0.0
2.231AlaPhe: 2.231 ± 0.0
4.462AlaGly: 4.462 ± 0.0
1.339AlaHis: 1.339 ± 0.0
4.909AlaIle: 4.909 ± 0.0
4.016AlaLys: 4.016 ± 0.0
11.156AlaLeu: 11.156 ± 0.0
2.677AlaMet: 2.677 ± 0.0
1.339AlaAsn: 1.339 ± 0.0
7.14AlaPro: 7.14 ± 0.0
1.785AlaGln: 1.785 ± 0.0
7.14AlaArg: 7.14 ± 0.0
7.14AlaSer: 7.14 ± 0.0
4.909AlaThr: 4.909 ± 0.0
6.693AlaVal: 6.693 ± 0.0
0.446AlaTrp: 0.446 ± 0.0
2.231AlaTyr: 2.231 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
1.785CysAla: 1.785 ± 0.0
0.892CysCys: 0.892 ± 0.0
1.339CysAsp: 1.339 ± 0.0
0.446CysGlu: 0.446 ± 0.0
1.339CysPhe: 1.339 ± 0.0
0.446CysGly: 0.446 ± 0.0
0.0CysHis: 0.0 ± 0.0
0.446CysIle: 0.446 ± 0.0
0.0CysLys: 0.0 ± 0.0
1.339CysLeu: 1.339 ± 0.0
0.446CysMet: 0.446 ± 0.0
0.0CysAsn: 0.0 ± 0.0
0.892CysPro: 0.892 ± 0.0
1.339CysGln: 1.339 ± 0.0
0.892CysArg: 0.892 ± 0.0
1.785CysSer: 1.785 ± 0.0
0.446CysThr: 0.446 ± 0.0
0.446CysVal: 0.446 ± 0.0
0.446CysTrp: 0.446 ± 0.0
0.892CysTyr: 0.892 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
5.801AspAla: 5.801 ± 0.0
0.892AspCys: 0.892 ± 0.0
4.462AspAsp: 4.462 ± 0.0
2.231AspGlu: 2.231 ± 0.0
3.57AspPhe: 3.57 ± 0.0
2.677AspGly: 2.677 ± 0.0
2.231AspHis: 2.231 ± 0.0
0.446AspIle: 0.446 ± 0.0
0.892AspLys: 0.892 ± 0.0
6.247AspLeu: 6.247 ± 0.0
0.0AspMet: 0.0 ± 0.0
2.677AspAsn: 2.677 ± 0.0
3.57AspPro: 3.57 ± 0.0
1.339AspGln: 1.339 ± 0.0
4.909AspArg: 4.909 ± 0.0
4.462AspSer: 4.462 ± 0.0
2.677AspThr: 2.677 ± 0.0
3.57AspVal: 3.57 ± 0.0
2.231AspTrp: 2.231 ± 0.0
0.446AspTyr: 0.446 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
4.462GluAla: 4.462 ± 0.0
0.0GluCys: 0.0 ± 0.0
2.677GluAsp: 2.677 ± 0.0
3.57GluGlu: 3.57 ± 0.0
1.785GluPhe: 1.785 ± 0.0
3.124GluGly: 3.124 ± 0.0
1.785GluHis: 1.785 ± 0.0
0.0GluIle: 0.0 ± 0.0
1.339GluLys: 1.339 ± 0.0
4.909GluLeu: 4.909 ± 0.0
0.446GluMet: 0.446 ± 0.0
1.339GluAsn: 1.339 ± 0.0
4.016GluPro: 4.016 ± 0.0
2.231GluGln: 2.231 ± 0.0
2.677GluArg: 2.677 ± 0.0
3.57GluSer: 3.57 ± 0.0
1.785GluThr: 1.785 ± 0.0
5.801GluVal: 5.801 ± 0.0
0.446GluTrp: 0.446 ± 0.0
1.339GluTyr: 1.339 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
3.57PheAla: 3.57 ± 0.0
0.892PheCys: 0.892 ± 0.0
3.57PheAsp: 3.57 ± 0.0
2.677PheGlu: 2.677 ± 0.0
1.339PhePhe: 1.339 ± 0.0
2.677PheGly: 2.677 ± 0.0
1.339PheHis: 1.339 ± 0.0
0.446PheIle: 0.446 ± 0.0
0.892PheLys: 0.892 ± 0.0
3.124PheLeu: 3.124 ± 0.0
1.785PheMet: 1.785 ± 0.0
2.677PheAsn: 2.677 ± 0.0
3.57PhePro: 3.57 ± 0.0
1.339PheGln: 1.339 ± 0.0
2.677PheArg: 2.677 ± 0.0
5.355PheSer: 5.355 ± 0.0
5.355PheThr: 5.355 ± 0.0
5.355PheVal: 5.355 ± 0.0
0.892PheTrp: 0.892 ± 0.0
0.446PheTyr: 0.446 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
5.355GlyAla: 5.355 ± 0.0
1.785GlyCys: 1.785 ± 0.0
3.57GlyAsp: 3.57 ± 0.0
4.462GlyGlu: 4.462 ± 0.0
2.677GlyPhe: 2.677 ± 0.0
3.124GlyGly: 3.124 ± 0.0
2.677GlyHis: 2.677 ± 0.0
1.785GlyIle: 1.785 ± 0.0
2.677GlyLys: 2.677 ± 0.0
4.909GlyLeu: 4.909 ± 0.0
0.0GlyMet: 0.0 ± 0.0
1.339GlyAsn: 1.339 ± 0.0
4.016GlyPro: 4.016 ± 0.0
1.339GlyGln: 1.339 ± 0.0
1.339GlyArg: 1.339 ± 0.0
4.016GlySer: 4.016 ± 0.0
3.124GlyThr: 3.124 ± 0.0
4.462GlyVal: 4.462 ± 0.0
1.339GlyTrp: 1.339 ± 0.0
1.339GlyTyr: 1.339 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
0.0HisAla: 0.0 ± 0.0
0.0HisCys: 0.0 ± 0.0
2.677HisAsp: 2.677 ± 0.0
0.892HisGlu: 0.892 ± 0.0
1.339HisPhe: 1.339 ± 0.0
0.446HisGly: 0.446 ± 0.0
0.892HisHis: 0.892 ± 0.0
1.785HisIle: 1.785 ± 0.0
0.892HisLys: 0.892 ± 0.0
4.016HisLeu: 4.016 ± 0.0
0.0HisMet: 0.0 ± 0.0
0.446HisAsn: 0.446 ± 0.0
3.124HisPro: 3.124 ± 0.0
0.892HisGln: 0.892 ± 0.0
4.462HisArg: 4.462 ± 0.0
3.124HisSer: 3.124 ± 0.0
2.677HisThr: 2.677 ± 0.0
2.677HisVal: 2.677 ± 0.0
0.892HisTrp: 0.892 ± 0.0
0.892HisTyr: 0.892 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
1.785IleAla: 1.785 ± 0.0
0.0IleCys: 0.0 ± 0.0
2.677IleAsp: 2.677 ± 0.0
1.785IleGlu: 1.785 ± 0.0
1.339IlePhe: 1.339 ± 0.0
1.339IleGly: 1.339 ± 0.0
1.339IleHis: 1.339 ± 0.0
0.446IleIle: 0.446 ± 0.0
0.892IleLys: 0.892 ± 0.0
4.016IleLeu: 4.016 ± 0.0
0.0IleMet: 0.0 ± 0.0
0.892IleAsn: 0.892 ± 0.0
4.462IlePro: 4.462 ± 0.0
1.339IleGln: 1.339 ± 0.0
0.892IleArg: 0.892 ± 0.0
2.677IleSer: 2.677 ± 0.0
1.785IleThr: 1.785 ± 0.0
1.339IleVal: 1.339 ± 0.0
0.446IleTrp: 0.446 ± 0.0
0.0IleTyr: 0.0 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
2.677LysAla: 2.677 ± 0.0
0.446LysCys: 0.446 ± 0.0
2.231LysAsp: 2.231 ± 0.0
0.892LysGlu: 0.892 ± 0.0
0.892LysPhe: 0.892 ± 0.0
0.892LysGly: 0.892 ± 0.0
0.446LysHis: 0.446 ± 0.0
0.892LysIle: 0.892 ± 0.0
0.446LysLys: 0.446 ± 0.0
3.57LysLeu: 3.57 ± 0.0
0.0LysMet: 0.0 ± 0.0
0.0LysAsn: 0.0 ± 0.0
2.231LysPro: 2.231 ± 0.0
0.446LysGln: 0.446 ± 0.0
0.892LysArg: 0.892 ± 0.0
2.677LysSer: 2.677 ± 0.0
1.785LysThr: 1.785 ± 0.0
2.231LysVal: 2.231 ± 0.0
0.0LysTrp: 0.0 ± 0.0
0.446LysTyr: 0.446 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
6.693LeuAla: 6.693 ± 0.0
2.231LeuCys: 2.231 ± 0.0
5.801LeuAsp: 5.801 ± 0.0
5.355LeuGlu: 5.355 ± 0.0
4.909LeuPhe: 4.909 ± 0.0
4.909LeuGly: 4.909 ± 0.0
1.785LeuHis: 1.785 ± 0.0
2.231LeuIle: 2.231 ± 0.0
2.231LeuLys: 2.231 ± 0.0
12.494LeuLeu: 12.494 ± 0.0
1.339LeuMet: 1.339 ± 0.0
4.462LeuAsn: 4.462 ± 0.0
9.371LeuPro: 9.371 ± 0.0
3.124LeuGln: 3.124 ± 0.0
12.048LeuArg: 12.048 ± 0.0
12.048LeuSer: 12.048 ± 0.0
4.909LeuThr: 4.909 ± 0.0
6.247LeuVal: 6.247 ± 0.0
2.231LeuTrp: 2.231 ± 0.0
2.677LeuTyr: 2.677 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
0.446MetAla: 0.446 ± 0.0
0.0MetCys: 0.0 ± 0.0
0.446MetAsp: 0.446 ± 0.0
0.446MetGlu: 0.446 ± 0.0
0.446MetPhe: 0.446 ± 0.0
0.446MetGly: 0.446 ± 0.0
0.892MetHis: 0.892 ± 0.0
0.446MetIle: 0.446 ± 0.0
0.892MetLys: 0.892 ± 0.0
2.231MetLeu: 2.231 ± 0.0
0.446MetMet: 0.446 ± 0.0
0.446MetAsn: 0.446 ± 0.0
0.446MetPro: 0.446 ± 0.0
0.446MetGln: 0.446 ± 0.0
1.339MetArg: 1.339 ± 0.0
2.231MetSer: 2.231 ± 0.0
1.339MetThr: 1.339 ± 0.0
0.446MetVal: 0.446 ± 0.0
0.0MetTrp: 0.0 ± 0.0
0.446MetTyr: 0.446 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
5.355AsnAla: 5.355 ± 0.0
0.0AsnCys: 0.0 ± 0.0
2.231AsnAsp: 2.231 ± 0.0
2.231AsnGlu: 2.231 ± 0.0
1.785AsnPhe: 1.785 ± 0.0
2.231AsnGly: 2.231 ± 0.0
0.892AsnHis: 0.892 ± 0.0
0.0AsnIle: 0.0 ± 0.0
0.446AsnLys: 0.446 ± 0.0
2.677AsnLeu: 2.677 ± 0.0
0.446AsnMet: 0.446 ± 0.0
0.446AsnAsn: 0.446 ± 0.0
2.677AsnPro: 2.677 ± 0.0
0.446AsnGln: 0.446 ± 0.0
1.339AsnArg: 1.339 ± 0.0
3.124AsnSer: 3.124 ± 0.0
1.785AsnThr: 1.785 ± 0.0
1.785AsnVal: 1.785 ± 0.0
0.446AsnTrp: 0.446 ± 0.0
1.339AsnTyr: 1.339 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
4.909ProAla: 4.909 ± 0.0
0.0ProCys: 0.0 ± 0.0
4.462ProAsp: 4.462 ± 0.0
4.909ProGlu: 4.909 ± 0.0
3.124ProPhe: 3.124 ± 0.0
6.693ProGly: 6.693 ± 0.0
4.909ProHis: 4.909 ± 0.0
2.677ProIle: 2.677 ± 0.0
1.339ProLys: 1.339 ± 0.0
7.14ProLeu: 7.14 ± 0.0
0.892ProMet: 0.892 ± 0.0
2.231ProAsn: 2.231 ± 0.0
9.371ProPro: 9.371 ± 0.0
2.231ProGln: 2.231 ± 0.0
8.032ProArg: 8.032 ± 0.0
8.032ProSer: 8.032 ± 0.0
4.909ProThr: 4.909 ± 0.0
2.231ProVal: 2.231 ± 0.0
0.446ProTrp: 0.446 ± 0.0
2.231ProTyr: 2.231 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
3.124GlnAla: 3.124 ± 0.0
0.446GlnCys: 0.446 ± 0.0
0.446GlnAsp: 0.446 ± 0.0
1.785GlnGlu: 1.785 ± 0.0
3.57GlnPhe: 3.57 ± 0.0
1.785GlnGly: 1.785 ± 0.0
0.446GlnHis: 0.446 ± 0.0
0.446GlnIle: 0.446 ± 0.0
0.446GlnLys: 0.446 ± 0.0
2.231GlnLeu: 2.231 ± 0.0
0.0GlnMet: 0.0 ± 0.0
0.446GlnAsn: 0.446 ± 0.0
2.677GlnPro: 2.677 ± 0.0
0.446GlnGln: 0.446 ± 0.0
3.57GlnArg: 3.57 ± 0.0
3.124GlnSer: 3.124 ± 0.0
3.124GlnThr: 3.124 ± 0.0
1.785GlnVal: 1.785 ± 0.0
0.446GlnTrp: 0.446 ± 0.0
1.785GlnTyr: 1.785 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
8.032ArgAla: 8.032 ± 0.0
0.892ArgCys: 0.892 ± 0.0
4.909ArgAsp: 4.909 ± 0.0
4.016ArgGlu: 4.016 ± 0.0
4.909ArgPhe: 4.909 ± 0.0
5.801ArgGly: 5.801 ± 0.0
1.785ArgHis: 1.785 ± 0.0
2.677ArgIle: 2.677 ± 0.0
2.677ArgLys: 2.677 ± 0.0
8.925ArgLeu: 8.925 ± 0.0
0.446ArgMet: 0.446 ± 0.0
1.339ArgAsn: 1.339 ± 0.0
6.693ArgPro: 6.693 ± 0.0
2.677ArgGln: 2.677 ± 0.0
3.124ArgArg: 3.124 ± 0.0
4.909ArgSer: 4.909 ± 0.0
4.462ArgThr: 4.462 ± 0.0
4.909ArgVal: 4.909 ± 0.0
1.785ArgTrp: 1.785 ± 0.0
1.339ArgTyr: 1.339 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
6.693SerAla: 6.693 ± 0.0
2.677SerCys: 2.677 ± 0.0
2.231SerAsp: 2.231 ± 0.0
3.124SerGlu: 3.124 ± 0.0
6.693SerPhe: 6.693 ± 0.0
4.909SerGly: 4.909 ± 0.0
3.57SerHis: 3.57 ± 0.0
4.016SerIle: 4.016 ± 0.0
0.0SerLys: 0.0 ± 0.0
8.032SerLeu: 8.032 ± 0.0
2.231SerMet: 2.231 ± 0.0
5.355SerAsn: 5.355 ± 0.0
5.801SerPro: 5.801 ± 0.0
5.355SerGln: 5.355 ± 0.0
5.801SerArg: 5.801 ± 0.0
11.156SerSer: 11.156 ± 0.0
7.586SerThr: 7.586 ± 0.0
4.016SerVal: 4.016 ± 0.0
1.785SerTrp: 1.785 ± 0.0
4.016SerTyr: 4.016 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
6.693ThrAla: 6.693 ± 0.0
1.785ThrCys: 1.785 ± 0.0
1.785ThrAsp: 1.785 ± 0.0
1.785ThrGlu: 1.785 ± 0.0
3.124ThrPhe: 3.124 ± 0.0
4.462ThrGly: 4.462 ± 0.0
2.231ThrHis: 2.231 ± 0.0
3.124ThrIle: 3.124 ± 0.0
1.785ThrLys: 1.785 ± 0.0
7.14ThrLeu: 7.14 ± 0.0
0.892ThrMet: 0.892 ± 0.0
1.785ThrAsn: 1.785 ± 0.0
3.57ThrPro: 3.57 ± 0.0
2.677ThrGln: 2.677 ± 0.0
5.355ThrArg: 5.355 ± 0.0
4.462ThrSer: 4.462 ± 0.0
5.355ThrThr: 5.355 ± 0.0
4.909ThrVal: 4.909 ± 0.0
1.785ThrTrp: 1.785 ± 0.0
0.0ThrTyr: 0.0 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
6.247ValAla: 6.247 ± 0.0
1.339ValCys: 1.339 ± 0.0
4.016ValAsp: 4.016 ± 0.0
2.231ValGlu: 2.231 ± 0.0
2.677ValPhe: 2.677 ± 0.0
4.016ValGly: 4.016 ± 0.0
1.785ValHis: 1.785 ± 0.0
1.785ValIle: 1.785 ± 0.0
1.339ValLys: 1.339 ± 0.0
7.586ValLeu: 7.586 ± 0.0
1.339ValMet: 1.339 ± 0.0
3.57ValAsn: 3.57 ± 0.0
5.355ValPro: 5.355 ± 0.0
1.339ValGln: 1.339 ± 0.0
5.801ValArg: 5.801 ± 0.0
4.909ValSer: 4.909 ± 0.0
2.677ValThr: 2.677 ± 0.0
1.785ValVal: 1.785 ± 0.0
0.446ValTrp: 0.446 ± 0.0
2.231ValTyr: 2.231 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
0.446TrpAla: 0.446 ± 0.0
0.892TrpCys: 0.892 ± 0.0
0.446TrpAsp: 0.446 ± 0.0
0.446TrpGlu: 0.446 ± 0.0
0.446TrpPhe: 0.446 ± 0.0
0.446TrpGly: 0.446 ± 0.0
1.339TrpHis: 1.339 ± 0.0
0.0TrpIle: 0.0 ± 0.0
0.892TrpLys: 0.892 ± 0.0
3.124TrpLeu: 3.124 ± 0.0
0.446TrpMet: 0.446 ± 0.0
0.0TrpAsn: 0.0 ± 0.0
0.892TrpPro: 0.892 ± 0.0
0.446TrpGln: 0.446 ± 0.0
1.785TrpArg: 1.785 ± 0.0
1.785TrpSer: 1.785 ± 0.0
0.446TrpThr: 0.446 ± 0.0
1.339TrpVal: 1.339 ± 0.0
0.892TrpTrp: 0.892 ± 0.0
0.892TrpTyr: 0.892 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.677TyrAla: 2.677 ± 0.0
0.0TyrCys: 0.0 ± 0.0
0.446TyrAsp: 0.446 ± 0.0
2.231TyrGlu: 2.231 ± 0.0
1.785TyrPhe: 1.785 ± 0.0
0.446TyrGly: 0.446 ± 0.0
0.892TyrHis: 0.892 ± 0.0
0.892TyrIle: 0.892 ± 0.0
0.0TyrLys: 0.0 ± 0.0
2.231TyrLeu: 2.231 ± 0.0
0.0TyrMet: 0.0 ± 0.0
0.892TyrAsn: 0.892 ± 0.0
0.892TyrPro: 0.892 ± 0.0
0.892TyrGln: 0.892 ± 0.0
2.231TyrArg: 2.231 ± 0.0
4.462TyrSer: 4.462 ± 0.0
3.57TyrThr: 3.57 ± 0.0
0.446TyrVal: 0.446 ± 0.0
0.0TyrTrp: 0.0 ± 0.0
0.892TyrTyr: 0.892 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (2242 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski